Printed: April 22, 1996 15:51
The Fragment Assembly programs provide additional functions for the GCG Fragment Assembly system.
GelStatus reads a GCG Fragment Assembly database, and produces a summary report of the quality of each contig.
GelPicture reads a contig from the Fragment Assembly database and displays a diagram of the gel alignments and a printout of the aligned gel sequences and consensus. GelPicture has been modified to include the sequence direction in both sections of the output, and to mark with '=======' any consensus sequence that is correct (agrees with every fragment) and has been sequenced in both directions.
GelFigure produces a graphical report of the status of a contig in a fragment assembly project.
GelAnalyze reads a GelStatus report from a shotgun project, and produces project statistics by the method of Lander and Waterman.