Homework Assignment Number 3
Search one of the protein sequences your retrieved in part 4 of the homework assignment number 2 for motifs using Interpro scan, BLOCKS+ scan, and MyHits Motif Scan (please include Prosite Patterns, Prosite Profiles, PRefiles and pFAM Hmms using local models). In each case please describe your results in terms of their biological significance, their stastistical significance and explain your conclusions. Please compare and contrast the three different results and mention the features you like best and least between the three sites. Please send your results to homework218@cmgm.Stanford.EDU
Due October 15, 2009