A good place for networking with other bioinformaticists is Bay Area Bioinformatics Discussion Group If you are unable to make this event but are still interested in the group please send an email to steve_madden@agilent.com or daryl_thomas@affymetrix.com and we will put you on our mailing list.
Lots of online jobs in bioinformatics Bioinformatics Salary Survey
Recent SF Chronicle Newspaper Articles about Bioinformatics
Career information about Bioinformatics from Science NextWave Testimonial about how bioinformatics can change your life.
Date: Monday, 4 August 2003 Bioinformatics Programmer Odyssey Thera, Inc. is a privately held biotechnology company, based in San Ramon, California (Odyssey), utilizing a pathway-based approach to drug discovery. This unique approach combines cellular disease models with an efficient method to identify drugs that interfere with the biochemical pathways that lead to disease. Odyssey has established biological, biochemical and information platforms that enhance the development of new therapeutics using this approach. Focusing on cancer, the company's mission is to identify novel drugs that act against this disease by re-routing the circuitry of the cancer cell. Odyssey's proprietary technology combines genomics and proteomics in a single step, allowing rapid and accurate annotation of function for specific genes and enabling large-scale biology. Informatics is a key element in our program and we are bringing together the best talents in this field through our own staff, external consultants, and industry partnerships. At present, Odyssey is looking for a full-time bioinformatics programmer. This is a three (3) month term position at this time. The successful candidate will report to Odyssey's Bioinformatics Group Leader, as a member of a small group building informatics architecture for the next decade of pharmaceutical discovery. Specifically, this individual will help build database and web interfaces to facilitate the large-scale study of protein-protein interactions, and exploitation of the effects of small molecules and siRNAs as inhibitors or enhancers. Odyssey's bioinformatics group supports other groups in molecular biology and drug discovery. Therefore, thinking, learning, communicating, and teamwork are at least as important as programming skills. Candidates should possess an MS/BS in Computer Science or have equivalent experience, and must have solid Perl, SQL, HTML and JavaScript skills in a Unix/Linux environment. Candidates should have the ability to rapidly develop application scripts to process data into and generate reports from the database (DBI, CGI) and must possess strong interest and significant knowledge in life sciences and/or drug discovery. Statistical knowledge and skills will be a plus. Salary is competitive and will commensurate with experience. Odyssey Thera, Inc. is an equal opportunity employer. Candidates should e-mail their resumes to Odyssey's Human Resources Manager at tfischer@odysseythera.com. No telephone inquiries or agents, please. See Odyssey's website at www.odysseythera.com.
Date: Monday, 17 March 2003 Genentech Requisition Number: 03-0006192 Bioinformatics Associate/Associate Bioinformatics Scientist Description: A position is available to analyze, curate and annotate gene information as a part of our Bioinformatics team. Responsibilities will include writing sequence analysis software, analyzing genes by their cDNA sequence, protein sequence, and genomic structure, and mining gene annotation databases. Other projects may include analysis of microarray expression data and mouse knock-out phenotypic data. The successful candidate will work closely with scientists throughout Research at Genentech, and in particular with the Immunology Department. Requirements: Excellent oral and written communications skills are essential for this position, and occasional presentations to the Bioinformatics and Immunology Departments will be required. 3+ years industry bioinformatics experience is a requirement for this position. Both experience and proficiency with DNA and protein sequence data, as well programming in PERL, SQL, and UNIX is required. Experience with molecular biology laboratory techniques, immunology, microarray expression data and mouse knock-out phenotypic data is desired. A B.S. degree in Molecular Biology or a related field is a minimum requirement, and a masters degree in a biology, bioinformatics or computer science related field is desirable. Date: Friday, 28 Feb 2003 Research Assistant in Bioinformatics. Assist in the design, implementation and evaluation of web based applications for biological research to integrate, consolidate and interpret zebrafish gene structures, expression patterns and mutant phenotypes at the Zebrafish Information Network (http://zfin.org) at the University of Oregon. Applicants should have a thorough understanding of bioinformatics database systems; familiarity with Perl, Java, SQL; web development; strong communication skills. Minimum qualifications: Bachelor's degree with 4 years experience in related field, Master's preferred. Send resume with names and phone numbers of three (3) references to E. McCumsey, Institute of Neuroscience, 1254 University of Oregon, Eugene, OR 97403-1254; fax 541-346-4548. The UO is an AA/EO/ADA institution committed to cultural diversity. Applications received by March 10 receive first consideration. Date: Monday, 13 January 2003
Corimbia is a software development company whose mission is to provide software systems to help life science researchers identify targets and disease markers for drug discovery by elucidating the biologically significant changes from undesired noise. Our current development efforts are focused on integrating statistical intelligence in analysis of genomic scale data particularly those of microarrays and integrated workflow managment sytems.
We have a dynamic and dedicated multidisciplinary team of biologists, software engineers and statisticians working together in a challenging, rewarding and open environment dedicated to creating state-of-the-art informatics solutions for life sciences.
Current Openings:
Bioinformatics Software Analyst, #BI-105
You will be responsible for analyzing, annotating and maintaining gene expression related data from public domain sources including data from various genomic, proteomic and biological databases.
Requirements:
An advanced degree in either the computational or
life sciences and 2-5 years of bioinformatic programming
experience,
Experience with sequence and microarray databases, and analysis
programs
Experience with UNIX and SQL with ability to program in Perl;
statistical programming languages a plus
Outstanding communication skills and ability to work in a
multidisciplinary dynamic and fast moving environment.
Software Engineer, #SE-105
This challenging position will involve design and implementation data analysis and data management software for genetic applications.
Requirements:
Minimum of 5 years experience with C, C++, and/or
Java programming,
Minimum of 3 years experience developing graphical user interfaces
for Win32 OS's using Visual C++,
Outstanding communication skills and ability to work in a
multidisciplinary dynamic and fast moving environment.
Background in biology and statistics a plus but not required.
For Consideration:
Send a cover letter
Curriculum Vitae (CV)
Salary history
List of references
And publication record, if applicable to
Corimbia, Inc.
Attn: Human Resources Department
2550 Ninth Street, Suite 201
Berkeley, CA 94710
Tel: (510) 548-4574
Fax: (510) 548-4594
Or Email to: careers@corimbia.com
Principals only. EOE
Email submissions must contain:
Job code(s) in the subject line of the message.
A text (ASCII) version of your CV in the body of the message(please do not send file attachments).
Date: Friday, 22 June 2001 Bioinformatics Associate at Genencor Research Associate: Responsible for deploying, enhancing and maintaining the enterprise bioinformatics software system. Operational tasks include importing and maintaining public and proprietary data, training users and assisting scientists with applying the software system to their biological problems. In addition, this person will be involved in the development of tools and methods for sequence analysis, sequence annotation and gene expression data. Will also participate in knowledge discovery using bioinformatics tools for functional and project needs. Requirements: BS/MS in computational biology, molecular biology, biochemistry or a related field with programming skills. 1-3 years of relevant experience with managing genomic databases, Unix and programming skills in Perl, Java and/or C/C++. Knowledge of sequence analysis algorithms and biostatistics is highly desirable. The ideal canditate would have lab experience as a molecular biologist. Contact Jian Yao at jyao@genencor.com or Human Resources 925 Page Mill Rd Genencor International Palo Alto, CA 94304 Date: Thursday, 21 June 2001 These jobs have already been filled. They are just listed here as examples of typical bioinformatics jobs. Position : Associate Bioinformatics Scientist Description : Develop and deploy a gene knowledge database and applications to support research. You will participate in project teams and work independently with scientists to process large volumes of data and transform them into iologically meaningful knowledge. You will have the opportunity to make a significant contribution to the bioinforamtics infrastructure, the evaluation of new bioinformatics tools, and the integration of proprietary and public biological data. Requirements: BS or MS degree in bioinformatics, computing or related field. The position requires a working knowledge of standard bioinformatics and sequence analysis software as well as familiarity with major protein/DNA databases. A minimum of 1 year professional programming experience in C, PL/SQL, and Java (JDBC, JSP, servlets). You must have demonstrated experience in HTML, CGI, Perl and UNIX. You should have been principally responsible for at least one major software or web programming project. Strong written and verbal communication. Ability to work well independently and as part of a team. Position : Associate Bioinformatics Scientist Description : A position is available to maintain and develop software for bioinformatics analysis of both sequence and gene expression data. You will help develop a suite of bioinformatics analysis software, by writing bioinformatics tools and consolidating and supplementing existing code. These analysis tools will contribute substantially to our bioinformatics infrastructure and our capability to discover new drug targets. Requirements: BS or MS degree in computing, bioinformatics or related field. The positon requries a strong background in large-scale software devleopment, with emphasis on C, C++, and Perl, plus a solid understanding of basic algorithms and data structures. You should have excellent skills in implementing algorithms and debugging code. You should also understand relational databases, ideally with e xperience in SQL programming. Knowelege of Web-based programming, PostScript, and/or Tcl/Tk would be an additional asset. In addition, you should have an understinding of basic molecular biology, including genomics, sequence analysis, and protein function. The candidate should work well independently and as part of a team. Position : Associate Bioinformatics Scientist Description : A position is available to work on our Bioinformatics team to perform curation and annotation of our gene database. The work will involve running sequnce ananlysi software, analyzing genes by their cDNA sequence, protein sequence, and genomic structure, and mining various gene annotation databases. The successful candidate will work closely with scientists in the Molecular Biology Department and throughout Research. Requirements: A masters degree or equivalent experience, knowledge of DNA and protein sequence data, and familarity with standard sequence analysis software is required. Programming in PERL and experience with the UNIX operating system is desired. Position : Associate Bioinformatics Scientist Description : A position is available to discover and annotate genes of interest for internal microarray efforts. The work will involve searching EST and genomic databases, running data mining softwae, analyzing DNA and protein sequence information, and maintaining sequence data in large-scale databases. Requirements: The position requries a working knowledge of standard bioinformatics and sequence analysis software (including BLAST), as well as a proficiency in Perl, SQL, and Unix programming. The positon also requires a thorough understanding of molecular biology and protein function, obtained ideally through doctoral-level research or equivalent experience.
Date: Friday, 9 June 2001
Scientific Applications Manager:
As a member of LION bioscience Inc. you will use your technical expertise in both pre- and post-sales support of LION bioscience products and services to prospects and customers in the US.
Responsibilities:
Minimum Qualifications:
Desired Qualifications:
Mark Pileski TechFind, Inc. Sr. Executive Search Manager (508) 647-0111 PO box 626;Natick;MA;01760 mark@techfind.com
Date: Monday, 21 May 2001 Raphael Recruitment has clients in the general Bay Area whose needs include; Sr. Bioinformatics, Junior Bioinformatics, S/W Engineers, and Research Scientists. I present the applicants to the companies, prepare them for the interview process, follow up with feedback, and then work with the company to present a reasonable offer for employment. These services are free to the individual; my fees are paid by the companies. I have been recruiting for fifteen years and have had my own firm for the last ten years. Kent Halpern, President, Raphael Recruitment 831-464-2760 (raphael@cruzio.com)
Date: Sunday, 29 Apr 2001 Bioinformatics Specialists This full-time position is a 6-month, contract assignment, which is renewable. Successful candidate will provide expert bioinformatics resource & support for joint collaboration between Aventis-Gencell & Stanford University in identifying genetic information for discovery projects. Responsibilities include establishing data and & hardware procedures for newly developed Bioinformatics Data Center primarily responsible for identifying genetic information. Provides UNIX & programming to manipulate sequences as well as technical support to Gencell/Stanford collaboration & applies expertise resulting in creative & innovative solutions to resolve technical issues. Position requires a B.S. Computer Science/Biology and proficient working experience of UNIX operating systems & administration, as well as object oriented programming languages. Must possess knowledge of Database Theory, Structures & Design (ORACLE) and be able to write simple scripts to manipulate sequences. Experience with a microarray software package including cluster analysis, statistics is required. Excellent organization, communication & interpersonal skills are required, along with a high level of creativity & problem solving skills. Master's in Biology or Molecular biology & 2+ years of related experience is preferred Job Code BIOINFO Adventis/Gencell Human Resources 3825 Bay Center Place Hayward, CA 94545 FAX (510) 266-5019 e-mail rhodora.cruz@aventis.com Date: Thurs, 19 Jan 2001 Program Mgr, Genome Analysis Actively define, champion, & implement a strategic plan for annotation of genomic sequence, including definition, creation (or acquisition), and delivery of "phase 1" informatics system which allows scientists throughout LG to access gene-based information via a gene "encyclopedia" or "gene atlas." Engage the participation & expertise of stakeholders throughout the LG organization. Seek internal & external resources as needed including: informatics analysts, scientists, & software. Actively communicate progress to stakeholders and LG organization at large. Work with senior members of LG informatics staff in the definition of strategic direction in other scientific areas. Keep abreast of advanced analysis and methods development in genomic annotation. Managerial responsibility for annotation team. Act as representative of informatics department internally and externally. MS or Ph.D. in Biology, Biochemistry, Bioinformatics, Computer Science, or other relevant are a and 3+ years experience in sequence analysis. Direct experience with advanced sequence analysis tools including: EST clustering & assembly algorithms, gene production programs, method s for identifying protein family members, & multiple sequence alignment algorithms. Direct experience with software systems for automatic annotation of ESTs & assemblies. Detailed knowledge of existing commercial tools for sequence analysis. Detailed knowledge of the drug discovery process, especially target identification & validation. Technical project leadership skills. In-depth understanding of software design & development process. Proactive team player with excellent communication skills. Once again thank you for your input. If you are interested please respond to this email directly. Regards, Doug Frankel Vice President, Pharmaceutical Division National Search Associates 2035 Corte de Nogal Suite 100 Carlsbad, California 92009Ph. 760-431-1115 x117FAX 760 431-0660www.nsasearch.com Date: Thurs, 4 Jan 2001 National Search Associates, a successful national recruiting firm, is looking for experienced genomics/bioinformatics/genotyping scientists for a top biotech instrumentation company on the west coast. I am writing to you because I understand that you are recognized as someone with expertise in this field, and therefore might have a unique perspective on this assignment. The descriptions follow for your review. Scientists, Human ID (Genotyping) Successful candidates will work interactively with group members in developing new applications for genetic testing human identification. Duties may include, but are not limited to, DNA cloning, DNA sequencing, Fragment Analysis, Single Nucleotide Polymorphism Detection and Data Analysis. You will work with Short Tandem Repeats, Genomic DNA, Y-chromosomes, Mitochondrial DNA, and DNA from forensic sources. You will also present information at local and national meetings as well as write manuscripts for publishing in scientific journals. Interactions with group members and customers in solving technical issues are required. This position requires knowledge and skills normally acquired through the completion of a degree in Molecular Biology/Biochemistry or Analytical Chemistry/Biochemistry. Working knowledge of particular needs of forensic laboratories. Experience with: Forensic DNA Laboratory, PCR instrumentation and protocols, ABI Prism Series of Instruments: 373, 377, 310, etc., GeneScan and GenoType Software, Short Tandem Repeat Polymorphisms and DNA sequencing. Good organizational skills. Ability to give articulate presentations at the national meeting level. Must be able to work in an interactive atmosphere as part of team of scientists. Good computer skills. Experience with Microsoft Word, Excel, PowerPoint, etc. Thank you in advance for your assistance. Best regards, Scott J. Scott Eadie, Ph.D. Director, Pharmaceutical & Biotechnology Division National Search Associates Carlsbad, CA Phone 760-431-1115 x111 Fax 760-431-1053 Email scotte@nsasearch.com
Date: Tues, 20 Dec 2000 Incyte Genomics Bioinformatics Associate/Senior Bioinformatics Associate - Editor Individual will use all available bioinformatics and sequence analysis tools to edit EST and genomic seuqences to generate full-length genes. Candidate should be familiar with bioinformatic and seuqence analysis tools, have good general computer skills, and strong, wtritten and oral communication skills. Experience with UNIX is highly desired. Resuires a BS/BA or equivalent in Biology or related disciplines and 1+ years post-graduate experience. Ref TY5312MB Location : Palo Alto, CA Bioinformatics Associate/Senior Bioinformatics Associate - Curator Individual will be part of a team that uses sequence analysis and bioinformatics tools to curate human gene seuqence data. This team will work to support the productiono f full-length gene sequences. Candidate should be familiar with bioinformatic and sequence analysis tools, have a good general computer skills, and strong, written and oral communications skills. Experience with UNIX is highly desired. Requires a BS/BA or equivalent in Biology or related disciplines and 1+ years post-graduate experience REF:TY5311MB, TY5313MB Location Palo Alto Please submit Resumes including the reference number to: E-Mail : jobs@incyte.com Please send resumes as ASCII text.
Date: Tues, 7 Nov 2000 > Incyte Genomics: Biotechnology Patent Writer > The individual will research and write patent applications on > polynucleotide and polypeptide sequence inventions. The individual will > work independently and on teams to complete projects requiring extensive > bioinformatics-based analysis of sequences and patentability > assessment. Requires a MS/PhD or equivalent in biochemistry/molecular > and cell biology/biological sciences. Requires the ability to complete > work by deadlines and attention to detail. Requires science writing > experience (e.g., thesis, journal publication, grant proposal). > Interest in patent law and experience with bioinformatics tools are > desired. > REF: FL5222SS0 > Location, Palo Alto, CA > > To apply for this position at Incyte Genomics, please fax your resume to > (650) 845-4176 or e-mail your resume to jobs@incyte.com. If sending > resume by email, please send as ASCII. Be sure to include the > requisition number (REF) of the position you're applying for. Please > visit www.incyte.com for more information on Incyte Genomics. > > -- > Susan K. Sather > Patent Agent/Supervisor, FL > Incyte Genomics, Inc. > 3160 Porter Drive > Palo Alto, CA 94304 > e-mail: ssather@incyte.com >
Date: Tues, 24 Oct 2000
Description: This is an entry level position in the nucleic acid section of the Protein and Nucleic Acid Facility in the Beckman Center at Stanford University. The position will support both automated DNA sequencing and synthesis components of the facility which relies on a practical as well as theoretical understanding of the scientific principles involved by the incumbent. Duties include: performing DNA sequencing reactions, operating automated sequencer, data entry, operating automated DNA synthesizers, running gel electrophoresis, updating databases, ordering reagents and supplies.
Qualifications: B.S. in biological science, experience working in a laboratory environment, ability to follow preexisting protocols reliably and efficiently, ability to work in a team-oriented environment, familiarity with Mac-based software, ability to communicate verbally with users, ability to accurately perform manual tasks in a research environment. Previous experience in the manipulation of DNA will be an advantage, although training will be provided where necessary. Contact ajsmith@cmgm.stanford.edu
Date: Wed, 4 Oct 2000 21:24:12 -0400 (EDT) We are working on 10 new Bioinformatics openings for our client in New Jersey. Please review the following openings and reply to this email given further interest in making recommendatio ns on the following openings. Scientist/Sr. Scientist, Bioinformatics (2) Sr. Research Scientist/Research Fellow, Bioinformatics (5) Sr. Research Bioinformatics Analyst Associate/Research Bioinformatics Analyst (2) Here are the descriptions: Scientific Computing Services: Scientist/Sr. Scientist, Bioinformatics (2) Responsible for providing centralized databases, software, and computational resources used i n bioinformatics analysis to researchers in the Disease Groups, Biotechnology, and Bioinforma tics, and coordination of these activities with global IS. Provide training for new users of the core informatics resources. Provide value-added services by cleaning and integrating mult iple data streams through automated processing systems. Candidate will also be responsible fo r coordinating, integrating, monitoring and quality assurance of software and database update s provided by external vendors and internal developers. Responsible for developing navigation al tools/CGI interfaces for accessing databases, evaluate the external software tools on a re gular basis and assist in software development and gene expression data management. Experienc e working with relational databases in a Unix environment, and programming skills in Perl, C/ C++, and Java is required. This position requires a M.S. in Bioinformatics, Computer Science or related field, with 10. Experience using GCG and other relevant sequence analysis tools pr eferred. Expression Technologies: Sr. Research Scientist/Research Fellow, Bioinformatics Responsible for project support to the Disease Groups and Biotechnology for analysis of trans criptional profiling data, including design of custom microarrays based on proprietary inform ation about therapeutically relevant candidate targets. Interface with project teams in the D isease groups for analysis and presentation of results. Work with the software development gr oup on evaluation and deployment of new tools and methodologies for analysis of expression in formation. Experience with PERL, Unix, NT, and standard statistical analysis software require d. This position requires a Ph.D in Statistics, Computer Science, or Computational Biology, o r a related field, with 2-4 years experience. Strong communications skills are needed. Sr. Research Bioinformatics Analyst This individual will be responsible for statistical and analytical support to the Disease Gro ups and Biotechnology for analysis of transcriptional profiling data. Analysis of large datas ets using statistical methodologies, as well as existing commercially available software. Imp lement novel statistical methodologies, and work with the software development group on evalu ation and deployment of new tools for analysis of expression information. Experience with sta ndard statistical analysis software required. An M.S. degree in Statistics or related field, with 1-3 years is required . The ideal candidate also has demonstrated experience in the ana lysis of expression data. Strong communications skills are needed. Target Informatics: Sr. Research Scientist/Research Fellow, Bioinformatics This individual will be responsible for management of collaborative projects between Bioinfor matics and Disease Groups to facilitate prioritization of targets within drug discovery proje ct teams. Supervise annotation specialists in development of comprehensive annotation around targets for Drug Discovery. Interact extensively with scientists and bioanalysts to in suppor t of genomics-based research. Experience with PERL, Unix, sequence analysis tools, and sequen ce databases is required. This position requires a Ph.D in Computer Science, Computational Bi ology, or Molecular Biology, or a related field, with 2-4 years experience. Strong communica tions skills are needed. Sr. Research Scientist/Research Fellow, Bioinformatics This individual will be responsible for management of collaborative projects between Bioinfor matics and Biotechnology for integrated analysis and presentation of data coming from genomic technologies. Supervise annotation specialists in development of comprehensive annotation ar ound targets for Drug Discovery. Interact extensively with scientists in support of genomics- based research. Experience with PERL, Unix, sequence analysis tools, and sequence databases i s required. This position requires a Ph.D in Computer Science, Computational Biology, or Mole cular Biology, or a related field, with 2-4 years experience. Strong communications skills a re needed. Associate/Research Bioinformatics Analyst (2) Responsible for gathering, analysis, and presentation of information for discovery of targets derived from genomic technologies to facilitate informed decisions about prioritization of t argets and research in collaboration with Disease Group drug discovery project teams. Individ uals within this team will take responsibility to develop comprehensive annotation through au tomated and manual tools, manually curate relevant targets, and will provide these data to Di sease Groups and Biotechnology in an easily accessible format. Experience with PERL, Unix, se quence analysis tools, and sequence databases is required. This position requires a M.S. in C omputer Science, Computational Biology, Molecular Biology, or a related field, with 2-4 years experience. Strong communications skills are required. Proteomics: Sr. Research Scientist/Research Fellow, Bioinformatics This individual will be responsible for management of Proteomics Bioinformatics projects and supervision of personnel in proteomics data analysis. This person will interact with research ers and the software development group on evaluation and deployment of new tools and methodol ogies for analysis of proteomic information. Support protein identification through the integ ration and analysis of 2-D gel image data, mass spectroscopy data, and protein sequence datab ases. This position requires a Ph.D. in Computer Science, Computational Biology, or Biochemis try, or a related field, with 2-4 years experience. Strong communications skills are require d. Research Bioinformatics Analyst/ Sr. Research Bioinformatics Analyst This individual will be responsible for providing analytical support for protein identificati on through the integration and analysis of 2-D gel image data, mass spectroscopy data, and pr otein sequence databases. Support the identification of proteins, and collection and archive of data related to target identification and validation. These data can be used to generate p rotein phenotypes to be used in understanding drug mechanism of action, pathway elucidation, and target discovery This position requires a M.S. in Computer Science, Computational Biology , or Biochemistry with 2-4 years experience. Strong communications skills are required. Project Support and Training: Sr. Research Scientist/Research Fellow, Bioinformatics This individual will be responsible for analytical support of genomics projects within the th e Biotechnology group based in Cambridge, Mass. This individual will provide project-based su pport for the Cambridge Genomic Center, primarily focused on analysis of EST and transcriptio nal profiling data. This individual will also be responsible for user education and training in the utilization of bioinformatics tools and methodologies to the scientific community, and collaborate closely with the software development group also based at the Cambridge Genomic Center. Experience with PERL, Unix, sequence analysis tools, and sequence databases is requir ed. This position requires a Ph.D. in Computer Science, Computational Biology, or Molecular B iology, or a related field, with 2-4 years experience. Strong communications skills are requ ired. The ideal candidate has additional experience in the analysis of expression data. Str ong communications skills are required. Sr. Research Scientist/Research Fellow, Bioinformatics This individual will be management of genomics projects in collaboration with Disease groups and Biotechnology. This individual will interact closely with colleagues within Bioinformatic s as well as scientists and bioanalysts within the project teams. This individual will also b e responsible for user education and training in the utilization of bioinformatics tools and methodologies to the scientific community. Experience with PERL, Unix, sequence analysis tool s, and sequence databases is required. This position requires a Ph.D. in Computer Science, Co mputational Biology, or Molecular Biology, or a related field, with 2-4 years experience. St rong communications skills are required. Regards, Cathy Cathleen Ford National Search Associates 2035 Corte de Nogal Suite 100 Carlsbad, California 92009Ph. 760-431-1115 FAX 760 431-0660www.nsasearch.com Date: Wed, 27 Sep 2000 14:20:30 -0400 (EDT) If you can make a reccomendation on the following search for a Boston based Genomics research and development organization. (Major Player) please respond to this email in the near term. The description of the position is below. Program Manager, Genome Analysis Actively define, champion, & implement a strategic plan for annotation of genomic sequence, i ncluding definition, creation (or acquisition), and delivery of "phase 1" informatics syste m which allows scientists throughout LG to access gene-based information via a gene "encyclop edia" or "gene atlas." Engage the participation & expertise of stakeholders throughout the L G organization. Seek internal & external resources as needed including: informatics analysts , scientists, & software. Actively communicate progress to stakeholders and LG organization at large. Work with senior members of LG informatics staff in the definition of strategic di rection in other scientific areas. Keep abreast of advanced analysis and methods development in genomic annotation. Managerial responsibility for annotation team. Act as representativ e of informatics department internally and externally. Must have Ph.D. in Biology, Biochemistry, Bioinformatics, Computer Science, or other relevant area and 3+ years experience in sequence analysis. Direct experience with advanced sequence analysis tools including: EST clustering & assembly algorithms, gene production programs, me thods for identifying protein family members, & multiple sequence alignment algorithms. Dire ct experience with software systems for automatic annotation of ESTs & assemblies. Detailed knowledge of existing commercial tools for sequence analysis. Detailed knowledge of the drug discovery process, especially target identification & validation. Technical project leaders hip skills. In-depth understanding of software design & development process. Proactive team player with excellent communication skills. Regards, Cathleen Ý Cathleen Ford Sr. Research Associate Pharmaceuticals Division National Search Associates 760-431-1115 x112cford@nsasearch.com <mailto:cford@nsasearch.com>
Date: Fri, 22 Sep 2000 19:47:09 -0400 (EDT) SENIOR SCIENTISTS: Scientist, Gene Expression Informatics - Responsible for scientific analysis of large data se ts derived from chip based gene expression experiments. Activities include technology evalua tion of expression platforms using experimental design methods and statistical models; develo pment of informatics tools and procedures to ensure high data quality; and the application of multivariate statistical methods in the analysis of large data sets for identification of di sease-relevant pharmaceutical targets. Evaluate third party tools and, with the informatics group, integrate tools and methods into an expression analysis system for scientific investig ators. Ph.D. in Biophysics, Biomedical Engineering, Statistics, or related field with hands- on experience in scientific computing. Ideally you can demonstrate expertise in the analysis of expression data. Good programming skills (Java, Perl, MATLAB and SQL) are highly desirab le. Self-motivation, excellent communication skills and ability to work in team environment. Program Manager, Genome Analysis - Actively define, champion, & implement a strategic plan fo r annotation of genomic sequence, including definition, creation (or acquisition), and delive ry of "phase 1" informatics system which allows scientists throughout LG to access gene-based information via a gene "encyclopedia" or "gene atlas." Engage the participation & expertise of stakeholders throughout the LG organization. Seek internal & external resources as neede d including: informatics analysts, scientists, & software. Actively communicate progress to stakeholders and LG organization at large. Work with senior members of LG informatics staff in the definition of strategic direction in other scientific areas. Keep abreast of advanced analysis and methods development in genomic annotation. Managerial responsibility for annot ation team. Act as representative of Aventis and LG informatics department internally and ex ternally. Must have Ph.D. in Biology, Biochemistry, Bioinformatics, Computer Science, or oth er relevant area and 3+ years experience in sequence analysis. Direct experience with advanc ed sequence analysis tools including: EST clustering & assembly algorithms, gene production p rograms, methods for identifying protein family members, & multiple sequence alignment algori thms. Direct experience with software systems for automatic annotation of ESTs & assemblies. Detailed knowledge of existing commercial tools for sequence analysis. Detailed knowledge of the drug discovery process, especially target identification & validation. Technical proj ect leadership skills. In-depth understanding of software design & development process. Pro active team player with excellent communication skills. RESEARCH ASSOCIATE: Analyst, Genome Informatics - Responsible for evaluation, use, integration, and training of a dvanced sequence analysis tools and data sets. Work closely with investigators in the identi fication of disease-relevant pharmaceutical targets using assembled EST, annotated genomic, a nd proprietary sequences. Act as scientific liaison between the bioinformatics development g roup and the investigators defining new scientific requirements and identifying & implementin g tools that integrate data enabling target selection. Evaluate, disseminate and test new sy stems created or proposed to meet these requirements. Background in Bioinformatics, Biophysic s, or Molecular Biology with 1-3 years full time bioinformatics experience in academia or ind ustry. Must have basic knowledge of sequence analysis tools and public DNA/protein databases . Must also be familiar with UNIX operating system and relational database technology. Cons iderable programming experience in Perl and one of the following languages: C, C++, Java. MOLECULAR GENOMICS RESEARCH ASSOCIATES: Molecular Biologist: Gene Expression-- Seeking highly motivated person capable of working ind ependently and as team player in the Gene Expression Group on disease and technology related projects. Candidates will perform research and data analysis on state-of-the-art oligo and cD NA microarray gene chip technologies. Candidate will perform molecular biology research such as RNA isolation and analysis, microbial culture, DNA/RNA labeling and hybridization, PCR an d gel electrophoresis. Position requires B.S./M.S. degree in biology or related field. Compu ter skills and/or molecular biology/genomics laboratory experience are desirable Regards, Cynthia Francisco National Search Associates 2035 Corte del Nogal, Suite 100 Carlsbad, CA 92009(760) 431-1115 ext. 114cynthia@nsasearch.com
Date: Thu, 14 Sep 2000 16:30:45 -0400 (EDT) BIOINFORMATICS SOFTWARE ENGINEER / SCIENTIST (Flexible on title) Salary: Open & flexible Location: New Jersey, Major Pharma Reports to: Senior Manager -- Scientific Computing Services Lead Generation Informatics DESCRIPTION / KEY RESPONSIBILITIES: Responsible for providing centralized databases, software, and hardware used in bioinformatic s analysis to researchers in the Disease Groups, Biotechnology, and Bioinformatics, and coord ination of these activities with global IT. Provide training for new users of the core inform atics resources. Provide value-added services by cleaning and integrating multiple data streams through automated processing systems. Candidate will also be responsible for coordina ting, integrating, monitoring and quality assurance of software and database updates provided by external vendors and internal developers. Responsible for developing navigational tools/C GI interfaces for accessing databases, evaluate the external software tools on a regular basi s and assist in software development and gene expression data management. REQUIREMENTS: Masters degree or equivalent experience in Bioinformatics, Computer Science or related field, experience working with relational databases in a Unix environment, and programming skills i n Perl, C/C++, and Java is required. Experience using GCG and other relevant sequence analysi s tools. If you can help with a recommendation or if you are interested in learning more, please respo nd to this email ASAP. Regards, Cynthia Francisco National Search Associates 2035 Corte del Nogal, Suite 100 Carlsbad, CA 92009(760) 431-1115 ext. 114Cynthia@nsasearch.com