L

L

Leucine in proteins

lactose operon

The cluster of three genes that code for the enzymes involved in utilization of lactose by Escherichia coli

lagging strand

The strand of the double helix which is copied in a discontinuous fashion during DNA replication.

LAN

Local Area Network. A network that connects computers in a small, defined area, such as the offices in a single wing or a group of buildings.

lariat

Refers to the lariat-shaped intron RNA that results from splicing a GU-AG intron.

lattice

in crystallography, a network of unit cells. Often called, a crystal lattice.

leader segment

The untranslated region of an mRNA upstream of the initiation codon.

leading strand

The strand of the double helix which is copied in a continuous fashion during DNA replication.

Leaky mutation

a mutation that results in partial loss of a characteristic

legacy database

databases that were designed and built using technology that is not currently the main database technology within an organization. These databases often have to be integrated into any new database system. Data warehouses are composed of legacy databases.

length abridgement

The gradual shortening of pseudogenes during evolution that is caused by an excess of deletions over insertions

(6-4) lesion

A dimer between two adjacent pyrimidine bases in a polynucleotide, formed by ultraviolet irradiation.

lethal mutation

A mutation that results in death of the cell or organism

leucine zipper

A dimerization domain commonly found in DNA-binding proteins (transcription factors for example).

library

An ordered collection of clones (i.e. cloned DNA from a particular organism), whose relationship to each other can be established by physical mapping. Compare with genomic library, arrayed library).

In programming, a library is a predefined object file that contain the machine language instructions for various operations commonly required by programs. A collection of tools written by other programmers that perform specific operations.

ligation

the formation of a phosphodeester bond to link two adjacent bases separated by a nick in double-stranded DNA. The process catalyzed by the enzyme ligase.

LINE

Long interspersed nuclear element. A type of genome-wide repeat, often with transposable activity

link

linkage

The proximity of two or more markers (e.g., genes, RFLP markers) on a chromosome; the closer together the markers are, the lower the probability that thewy will be separated during DNA repair or replication processes (binary fission in prokaryotes, mitosis or meiosis in eukaryotes) and hence the greater the probability that they will be inherited together.

linkage map

A map of the relative positions of genetic loci on a chromosome, determined on the basis of how often the loci are inherited together. Distance is measured in centimorgans (cM).

linker DNA

A DNA that links nucleosomes: the "string" between the "beads" in the beads-on-a-string model for chromatin structure.

linker histone

A histone, such as H1, that is located outside of the nucleosome core octamer.

lint

A UNIX program that can detect bugs, portability problems, and other possible errors in C programs.

local alignment

An optimal alignment that includes the most similar local region or regions. Local alignments may include only short portions of the sequences that were used to calculate the alignment. Local align ments are especially useful for distantly related sequences, although thewy work equally well for closely related ones.

localize

Determination of the original position(locus) of a gene or other marker on a chromosome

localized repeated sequence

Tandemly arrayed, repetitive sequences, usually made up of short simple repeated motifs (e.g. satellite DNA)

locus (pl. loci)

The position on a chromosome of a gene or other chromosome marker; also, the DNA at that positon. The use of locus is sometimes restricted to mean regions of DNA that are expressed.

locus control region

A DNA sequence that maintains a functional domain in an open, active configuration.

lod score

A statistical measure of linkage as revealed by pedigree analysis.

login

Sign on and identify yourself to the system. At the beginning of each terminal session, the system propmts a user for their username and a password.

log-odds

A scoring system in which the values are the logarithm of the relative probability (odds) of a comparison being due to homology or being due to chance.

long branch attraction

The artifactual placement of rapidly evolving sequences with other rapidly evolving sequences and slowly evolving sequences with other slowly evolving sequences in phylogenetic trees. The placement is independent of the true phylogenetic relationships.

long patch repair

A nucleotide excision repair process of Eschericia coli that results in excision and resynthesis of up to 2kb of DNA.

loss-of-function mutation

A mutation that reduces or abolishes a protein's activity.

low complexity region

A region of a nucleic acid or protein sequence with highly biased residue composition, or consisting of many short, near-perfect repeats.

lowly repetitive gene

Genes appearing in only a few copies in the haploid genome.

ls

UNIX command for listing the contents of a directory

LTR element

A type of genome-wide repeat typified by the presence of long terminal repeats (LTRs).

lysogenic pathway

The type of bacteriophage infection that involves integration of the phage genome into the host DNA molecule.

lytic pathway

The type of bacteriophage infection that involves lysis of the host cell immediately after the initial infection, with no integration of the phage DNA molecule into the host genome.