T

T

Threonine in proteins, Thymine in DNA

tandem repeat sequences

Multiple copies of the same base sequence on a chromosome; used as a marker in physical mapping

tar

Short for Tape Archive. A UNIX command for copying files to or restoring files from a backup tape.

TATA box

The name given to the commonly occurring substring "TATA" that appears in the promotor region of many genes.

tautomeric shift

The spontaneous change of a molecule from one structural isomer to another

tautomers

Structural isomers that are in dynamic equilibrium

taxon

A taxonomic group of any rank (e.g., species, genus, kingdom) to which individual organisms are assigned

taxonomy

The principles and procedures according to which species are named and assigned to taxonomic groups

TCP/IP

Transmission Control Protocol / Internet Protocol - An internet protocol for communication between subnets. It is designed to function well even in an unreliable subnet.

tcsh

The T shell. A UNIX command shell similar to csh, but with more features.

telnet

An Internet protocol for remote login to a host computer.

telomere

The ends of chromosomes. These specialized structures are involved in the replication and stability of linear DNA molecules.

telomerase

The enzyme that maintains the ends of eukaryotic chromosomes by synthesizing telomeric repeat sequences.

temperature sensitive mutation

A type of conditional-lethal mutation; one that is expressed only above a threshold temperature

template

The polynucleotide that is copied during strand synthesis reaction catalyzed by a DNA or RNA polymerase

template-dependent DNA synthesis

Synthesis fo a DNA molecule on a DNA or RNA template

template dependent RNA synthesis

Synthesis of a RNA molecule on a DNA or RNA template

template independent RNA polymerase

An enzyme that polymerizes RNA without the use of a template. For example during the addition of a Poly-A tail to mRNA

template strand

The polynucleotide that acts as the template for RNA synthnesis during the transcription of a gene.

terminal deoxynucleotidyl transferase

An enzyme that adds one or more nucleotides to the 3'-ends of DNA molecules

terminal node

The graphical representation of an extant taxon in a phylogenetic tree

termination codon

A codon for which no normal tRNA exists, the presence of which terminates the process of translation. The three termination codons in the genetic code are UAG, UAA and UGA.

termination factor

A protein that plays an ancillary role in termination of transcription.

terminator sequence

One of several sequences on a bacterial genome involved in termination of DNA replication

tertiary structure

In proteins and nucleic acids, the three-dimensional structure of the molecule brought about by its folding upon itself.

test cross

A genetic cross between a heterozygote and the recessive homozygote.

thermal cycle sequencing

A DNA sequencing method that uses PCR to generate chain-terminated polynucleotides.

thermal stability

The degree of resistance against denaturation or melting by changes in temperature.

Thymine

One of the pyrimidine bases found in DNA.

Tm

The median melting temperature of duplex DNA

Tn3 type transposon

A type of DNA transposon that does not have flanking insertion sequences

topoisomerase

topology

the branching pattern of a phylogenetic tree

totipotent

Refers to a cell that is not committed to a single developmental pathway and can hence give rise to all types of differentiated cell.

traceback

The second stage of a dynamic programming alignment, in which the alignment is found by following the pointers back from the highest scoring position in the score matrix.

trailer segment

The untranslated region of a mRNA downstream of the termination codon.

trans

The arrangement of two sequences or genes on different chromosomes

transcript

A RNA copy of a gene.

transcription

The synthesis of a RNA molecule on a DNA template.The process by which an RNA molecule is synthesized complementary to the DNA in a gene. In eukaryotes, both the introns and the exons are transcribed in the tRNA. The introns are later spliced out, creating a mRNA

transcription bubble

The nonbase-paired region of the double helix, maintained by RNA polymerase, within which transcription occurs

transcription coupled repair

A nucleotide excision repair process that results in repair of the template strands of genes.

transcription factor

General term for a protein that aids in initiating or regulating transcription.

transcription factory

The large structure attached to the nuclear matrix, the site of RNA synthesis.

transcription initiation

The assembly upstream of a gene of the complex of proteins that will subsequently copy the gene into RNA

transcription-termination site

The point at which the transcription of RNA is terminated. In RNAs that are polyadenylated, it may or may not be identical with the polyadenylation site.

transcriptome

The entire mRNA content of a cell

transduction

The transfer of host genetic information from one cell to another by means of a virus.

transduction mapping

The use of transductin to map the relative positions of genes in a bacterial genome

transfer-messenger RNA

A bacterial RNA involved in protein degradation

transfer RNA (tRNA)

The RNA molecule that transports a specific amino acid to a growing amino acid chain, as directed by a specific codon in the mRNA.

transformant

A cell that has become transformed by the uptake of naked DNA

transformation

A process by which the genetic material carried by an individual cell is altered by incorporation of exogenous DNA into its genome.

transformation mapping

The use of transformation to map the relative positions of genes in a bacterial chromosome.

transgenic organism

An organism into which the genes of other species have been engineered

transition

The a change in the DNA by mutation or engineering that causes a substitution of a purine for a purine (C to a T) or a pyrimidine to a pyrimidine (A to a G or vice versa).

translation

The derivation of the amino acid sequence of a polypeptide from the sequence of a mRNA molecule via tRNA intermediates which occurs in association with a ribosome.

translocation

The movement of a ribosome along a mRNA molecule during translation

transposable element

A sequence that can move about in the genome of an organism

transposase

An enzyme that catalyzes transposition of a transposable genetic element

transposition

The movement of genetic material from on egenomic location to another

transposon

A transposable element carrying additional genes beside those encoding the transposition functions

transversion

The a change in the DNA by mutation or engineering that causes a substitution of a purine for a pyrimidine or vice versa.

trinucleotide repeat expansion disease

A disease that results from the expansion fo an array of trinucleotide repeats in or near to a gene. For example Huntington's disease.

triplet binding assay

A technique for determining the coding specificity of a triplet of nucleotides

triplex

A DNA structure comprising three polynucleotides. Important in antisense oligonucleotide DNA therapy.

trisomy

The presence of three copies of a chromosome in an otherwise diploid cell

twintron

A composite structure made up of two or more Group II and/or Group III introns embedded in each other.

twofold degenerate site

A nucleotide site in the coding region at which one of the three possible nucleotide changes is synonymous and the other two are nonsynonymous.