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1. Chiang, T. H., Apaydin, M. S., Brutlag, D. L., Hsu, D., & Latombe, J. C. (2007). Using stochastic roadmap simulation to predict experimental quantities in protein folding kinetics: folding rates and phi-values. J Comput Biol, 14(5), 578-593.

2. Huang, X., & Brutlag, D. L. (2007). Dynamic use of multiple parameter sets in sequence alignment. Nucleic Acids Res, 35(2), 678-686.

3. Saxonov, S., Berg, P., & Brutlag, D. L. (2006). A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc Natl Acad Sci U S A, 103(5), 1412-1417.

4. Tellez, A. B., Crowder, S., Spagnolo, J. F., Thompson, A. A., Peersen, O. B., Brutlag, D. L., et al. (2006). Nucleotide channel of RNA-dependent RNA polymerase used for intermolecular uridylylation of protein primer. J Mol Biol, 357(2), 665-675.

5. Rhee, S. Y., J. Taylor, G. Wadhera, A. Ben-Hur, D. L. Brutlag and R. W. Shafer. 2006. Genotypic predictors of human immunodeficiency virus type 1 drug resistance. Proc Natl Acad Sci U S A.
   Medline Abstract or Full Text or PNAS site
6. Naughton, B. T., E. Fratkin, S. Batzoglou and D. L. Brutlag. 2006. A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites. Nucleic Acids Res.
   Medline Abstract or Full Text or Nucleic Acids Research site
   
   
7. Ebert, J. and D. L. Brutlag. 2006. Development and Validation of a Consistency Based Multiple Structure Alignment Algorithm Running title: Consistency Based Multiple Alignmen. Bioinformatics 22.
   Medline Abstract or Full Text or Bioinformatics site
   
   
8. Liang, M. P., D. L. Brutlag and R. B. Altman. 2006. Identifying serine protease catalytic sites with SeqFEATURE. Protein Science 15: In Press.
   Abstract or Full Text or Protein Science site
   
   
9. Saxonov, S., P. Berg and Brutlag D. L. (2006). Genome-wide Analysis of CpG Dinucleotides Indicates That the Human Genome Contains Two Distinct Classes of Promoters. Proc. Natl. Acad. Sci. USA 103.
   Medline Abstract or Full Text or Proceedings of the National Academy of Sciences site
   
   
10. Tellez, A. B., S. Chowder, J. F. Spagnolo, A. A. Thompson, O. B. Peersen, D. L. Brutlag and K. Kirkegaard. (2006). Nucleotide channel of RNA-dependent RNA polymerase used for intermolecular uridylylation of protein primer. Journal Of Molecular Biology 355.
    Medline Abstract or Full Text or Journal of Molecular Biology site
    
    
11. Brutlag, D. L. (2006). Inferring protein function from protein sequence, p. In press. In T. Lengauer (ed.), Bioinformatics - From Genomes to Therapies , . Wiley-VCH, Weinheim, Germany, Pages 1087-1119.
    
    
12. Ben-Hur, A. and D. L. Brutlag (2005). Protein sequence motifs: Highly predictive features of protein function. Feature extraction, foundations and applications. I. Guyon, S. Gunn, M. Nikravesh and L. Zadeh, Springer Verlag.
    Abstract or Full Text or Springer Verlag site
    
    
13. Bertaccini, E. J., Shapiro, J., Brutlag, D. L. and Trudell, J. R. (2005). Homology modeling of a human glycine alpha 1 receptor reveals a plausible anesthetic binding site. J Chem Inf Model, 45, 128-135.
    Medline Abstract or Full Text or Journal of Chemical Information and Modeling site
    
    
14. Su, Q. J., Lu, L., Saxonov, S. and Brutlag, D. L. (2005). eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity. Nucleic Acids Res, 33, D178-182.
    Medline Abstract or Full Text or Nucleic Acids Research site
    
    
15. Liang MP, Troyanskaya OG, Laederach A, Brutlag DL, and Altman RB."Computational Functional Genomics." IEEE Signal Processing Magazine.(2004) Nov;21(6):62-69.
    Full Text or IEEE Signal Processing Magazine site
    
    
16. Liu, Y., Wei, L., Batzoglou, S., Brutlag, D. L., Liu, J. S. and Liu, X. S. (2004b). A suite of web-based programs to search for transcriptional regulatory motifs. Nucleic Acids Res, 32, W204-207.
    Medline Abstract or Full Text or Nucleic Acids Research site
    
    
17. Shapiro, J. and Brutlag, D. (2004a). FoldMiner and LOCK 2: protein structure comparison and motif discovery on the web. Nucleic Acids Res, 32, W536-541.
    Medline Abstract or Full Text or Nucleic Acids Research site
    
    
18. Shapiro, J. and Brutlag, D. L. (2004b). FoldMiner: Structural Motif Discovery Using an Improved Superposition Algorithm. Protein Science, 13, 278-294.
    Medline Abstract or Full Text or Protein Science site
    
    
19. M.S. Apaydin, D.L. Brutlag, C. Guestrin, D. Hsu, J.C. Latombe and C. Varma, Stochastic Roadmap Simulation: An efficient Representation and Algorithm for Analyzing Molecular Motion (2003) Journal of Computational Biology, (10) 257-281.
    Medline Abstract or Full Text or Journal of Computational Biology site
    
    
20. Liang, M. P., Brutlag, D. L., & Altman, R. B. (2003). Automated construction of structural motifs for predicting functional sites on protein structures. Pacific Symposium Biocomput, 204-215.
    Medline Abstract or Full Text
    
    
21. Bennett, S. P., Lu, L. and Brutlag, D. L. (2003). "3MATRIX and 3MOTIF: A Protein Structure Visualization System for Conserved sequence Motifs" Nucleic Acids Research 31(13), 3328-3332.
    Medline Abstract or Full Text or Nucleic Acids Research site
    
    
22. Liang, M. P., Banatao, D. R., Klein, T. E., Brutlag, D. L. and Altman, R. B. (2003). "WebFEATURE: An interactive web tool for identifying and visualizing functional sites on macromolecular structures" Nucleic Acids Research 31(13), 3324-3327.
    Medline Abstract or Full Text or Nucleic Acids Research site
    
    
23. Ben-Hur , A and Brutlag, D. L. (2003). "Remote Homology Detection: A Motif Based Approach" Bioinformatics, 19: i26-i33.
    Medline Abstract or Full Text or Bioinformatics site
    
    
24. Bennett, S. P., Nevill-Manning, C. G. and Brutlag, D. L. (2003). "3MOTIF: visualizing conserved protein sequence motifs in the protein structure database" Bioinformatics 19(4): 541-543.
    Medline Abstract or Full Text or Bioinformatics site
    
    
25. Brutlag, D., Apaydin, S., Guestrin, C., Hsu, D., Varma, C., Singh, A. and Latombe, J. C. (2002). Using robotics to fold proteins and dock ligands. Bioinformatics, 18 Suppl 2, S74.
    Medline Abstract or Full Text or Bioinformatics site
    
    
26. Apaydin, M. S., Guestrin, C., Varma, C., Brutlag, D. L. and Latombe, J.-C. (2002). Stochastic Roadmap Simulation for the Study of Ligand-Protein Interactions. Bioinformatics, 18, S18-S26.
    Medline Abstract or Full Text or Bioinformatics site
    
    
27. Liu, X. Brutlag, D. L. and Liu, J. S. (2002). "An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments" Nature Biotechnology, 20(8): 835-9.
    Medline Abstract or Full Text or Nature Biotechnology site
    
    
28. Apaydin, M. S., D. L. Brutlag, C. Guestrin, D. Hsu and J.-C. Latombe (2002). "Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion." Recomb 2002 9: 12-21.
    Medline Abstract or Full Text
    
    
29. Apaydin, M. S., A. P. Singh, D. L. Brutlag and J. C. Latombe (2001). "Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps." International Conference on Robotics and Automatons 2001: 932-939.
    Abstract or Full Text
    
    
30. Liu, X. Brutlag, D. L., and Liu, J.(2001). BIOPROSPECTOR: Discovering Conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pacific Symposium on Biocomputing, 127-38.
    Medline Abstract or Full Text
    
    
31. Huang, J. Y. and Brutlag, D. L. (2001). The eMOTIF Database. Nucleic Acids Research, 29(1), 202-204.
    Medline Abstract or Full Text or Nucleic Acids Research site
    
    
32. Wu, T. D., Nevill-Manning, C. G. and Brutlag, D. L. (2000). Fast probabilistic analysis of sequence function using scoring matrices. Bioinformatics, 16, 1-12.
    Medline Abstract or Full Text or Bioinformatics site
    
    
33. Schmidler, S. C., Liu, J. S. and Brutlag, D. L. (2000). Bayesian segmentation of protein secondary structure. J. Comput Biol, 7(1-2), 233-248.
    Medline Abstract or Full Text or Journal of Computational Biology site
    
    
34. Wu, T. D., Nevill-Manning, C. G. and Brutlag, D. L. (1999). Minimal-Risk Scoring Matrices for Sequence Analysis. J. Comp. Biol., 6(2), 219-235.
    Medline Abstract or Full Text or Journal of Computational Biology site
    
    
35. Singh, A. P., Latombe, J. C. and Brutlag, D. L. (1999). A motion planning approach to flexible ligand binding. ISMB, 252-261.
    Medline Abstract or Full Text
    
    
36. Lengauer, T., Schneider, R., Bork, P., Brutlag, D., Glasgow, J., Mewes, H.-W. and Zimmer, R. (1999). Proceedings of the Seventh International Conference on Intelligenet Systems for Molecular Biology. In Heidelberg, Germany: AAAI Press, 307.
    Abstract
    
    
37. Wu, T. D., Schmidler, S. C., Hastie, T. and Brutlag, D. L. (1998). Regression Analysis of Multiple Protein Structures. RECOMB '98, 5(3), 585-595.
    Medline Abstract or Full Text
    
    
38. Wu, T. D., Schmidler, S. C., Hastie, T. and Brutlag, D. L. (1998). Modeling and Superposition of Multiple Protein Structures using Affine Transformations: Analysis of the Globins. Pacific Symposium on Biocomputing '98, 509-520
    Medline Abstract or Full Text
    
    
39. Rindfleisch, T. C. and Brutlag, D. L. (1998). Directions for clinical research and genomic research into the next decade: implications for informatics. J Am Med Inform Assoc, 5(5), 404-411.
    Medline Abstract or Full Text or Journal of the American Medical Informatics Association site
    
    
40. Nevill-Manning, C. G., Wu, T. D. and Brutlag, D. L. (1998). Highly Specific Protein Sequence Motifs for Genome Analysis. Proc. Natl. Acad. Sci. USA, 95(11), 5865-5871.
    Medline Abstract or Full Text or Proceedings of the National Academy of Sciences
    
    
41. Brutlag, D. L. (1998). Genomics and Computational Molecular Biology. Current Opinions in Microbiology, 1(3),340-345.
    Medline Abstract or Full Text
    
    
42. Singh, A. P, & Brutlag, D. L. (1997). Hierarchical protein structure superposition using both secondary structure and atomic representations. ISMB. 5: 284-293.
    Medline Abstract or Full Text
    
    
43. Nevill-Manning C. G., Sethi, K., Wu, T. D. & Brutlag, D. L. (1997). Enumerating and ranking discrete motifs. ISMB. 5: 202-209.
    Medline Abstract or Full Text
    
    
44. Wu, T. D. and Brutlag, D. L. (1996). Discovering Empirically Conserved Amino Acid Substitution Groups in Databases of Protein Families. ISMB-96, 3, 230-240.
    Medline Abstract or Full Text
    
    
45. Tomita M,, Shimizu, N., Brutlag, D. L. (1996). Introns and reading frames: correlation between splicing sites and their codon positions. Mol Biol Evol. 13(9): 1219-1223
    Medline Abstract or Full Text
    
    
46. Brutlag, D. L. and Sternberg, M. (1996). Sequences and Topology: Challenges for Algorithms and Experts. Currrent Opinions in Structural Biology 6 (3), 343-345.
    Abstract or Full Text or Current Opinion in Structural Biology site
    
    
47. Wu, T. D. and Brutlag, D. L. (1995). Identification of protein motifs using conserved Amino Acid Properties and Partitioning Techniques. Intelligent Systems for Molecular Biology-95, pp. 402-410.
    Medline Abstract or Full Text
    
    
48. Klingler, T. M. and Brutlag, D. L. (1995). Structural Implications of Sequence Correlations in tRNA Sequences. Unpublished,
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49. Naor, D. and Brutlag, D. L. (1994). On Near-Optimal Alignments of Biological Sequences. J. Computational Biology 1 (4) 349-366.
    Medline Abstract or Full Text or Journal of Computational Biology site
    
    
50. Klingler, T. M. and Brutlag, D. L. (1994). Discovering Structural Correlations in a-Helices. Protein Science 3 , 1847-1857.
    Medline Abstract or Full Text or Protein Science site
    
    
51. Klingler, T. M. and Brutlag, D. L. (1994). Discovering side-chain correlation in alpha-helices. ISMB, 2, 236-43.
    Medline Abstract or Full Text
    
    
52. Galper, A. R. and Brutlag, D. L. (1994). Computational Simulations of Biological Systems. In Smith, D. W. (Ed.), Biocomputing: Informatics and Genome Projects New York NY: Academic Press pp. 269-306.
    Abstract or Full Text
    
    
53. Brutlag, D. L. (1994). Understanding the Human Genome. In Leder, P., Clayton, D. A. and Rubenstein, E. (Ed.), Scientific American: Introduction to Molecular Medicine (pp. 153-168). New York NY: Scientific American Inc.
    Abstract or Full Text
    
    
54. Altman, R., Brutlag, D., Karp, P. and Searls, D. (1994). Second International Conference on Intelligent Systems in Molecular Biology. Menlo Park, CA: AAAI Press, 483 pages.
    Abstract
    
    
55. Naor, D. and Brutlag, D. L. (1993). On Suboptimal Alignments of Biological Sequences., Computer Science, 684, 179-196.
    Abstract or Full Text
    
    
56. Klingler, T. and Brutlag, D. L. (1993). Detection of Correlations in tRNA with structural implications. Intelligent Systems for Molecular Biology,Vol 1, pp. 225-233.
    Medline Abstract or Full Text
    
    
57. Galper, A. R., Brutlag, D. L. and Millis, D. H. (1993). Knowledge-Based Simulation of DNA metabolism: Prediction of Action and Envisionment of Pathways. In Hunter, L. (Ed.), Artificial Intelligence in Molecular Biology (pp. 365-395). Palo Alto: AAAI Press.
    Abstract or Full Text
    
    
58. Brutlag, D. L., Dautricourt, J. P., Diaz, R., Fier, J., Moxon, B. and Stamm, R. (1993). BLAZE: An implementation of the Smith-Waterman Comparison Algorithm on a Massively Parallel Computer. Computers and Chemistry 17 , 203-207.
    Abstract or Full Text
    
    
59. Brutlag, D. L. and Klingler, T. M. (1993). Automatic Discovery of Protein Motifs. Crystal City, Virginia: ACS Books.
    Abstract or Full Text
    
    
60. Brutlag, D. L., Galper, A. R. and Millis, D. H. (1991). Rule-Based Simulation of DNA Metabolism: I. Prediction of Enzyme Action. Computer Applications in Biosciences 7 (1), 9-19.
    Abstract or Full Text
    
    
61. Barsalou, T. and Brutlag, D. L. (1991). Searching gene and protein sequence databases. Medical Computing, 8(3), 144-9.
    Medline Abstract or Full Text
    
    
62. Galper, A. R. and Brutlag, D. L. (1990). Parallel Similarity Search and Alignment with the Dynamic Programming Method (KSL Report 90-74). Stanford University.
    Abstract or Full Text
    
    
63. Brutlag, D. L., Dautricourt, J.-P., Maulik, S. and Relph, J. (1990). Improved Sensitivity of Searches of Biological Sequence Databases. CABIOS, 6(3), 237-245.
    Medline Abstract or Full Text
    
    
64. Hipeau-Jacquotte, R., Brutlag, D. L. and Bregegere, F. (1989). Conversion and reciprocal exchange between tandem repeats in Drosophila melanogaster. Mol Gen Genet, 220(1), 140-6.
    Medline Abstract or Full Text
    
    
65. Goldstein, A., & Brutlag, D. L. (1989). Is there a relationship between DNA sequences encoding peptide ligands and their receptors?. Proc. Natl. Acad Sci U S A, 86, 42-5.
    Medline Abstract or Full Text or Proceedings of the National Academy of Sciences
    
    
66. Fairman, R. & Brutlag, D.L. (1988). Expression of the Drosophila Type II topoisomerase is developmentally regulated. Biochemistry 27, 560-565.
    Medline Abstract or Full Text
    
    
67. Brutlag, D. L., & Kristofferson, D. (1988). BIONET: An NIH Computer Resource for Molecular Biology. In R. R. Colwell (Ed.), Biomolecular Data: A Resource in Transition (pp. 287-294.). Oxford: Oxford University Press.
    Abstract or Full Text
    
    
68. Brutlag, D. L. (1988). Expert System Simulations as Active Learning Environments. In R. R. Colwell (Ed.), Biomolecular Data: A Resource in Transition (pp. 185-188.). Oxford: Oxford university Press.
    Abstract or Full Text
    
    
69. Lohe, A. & Brutlag, D. (1987). Adjacent satellite DNA segments in Drosophila melanogaster: Structure of Junctions. J. Mol. Biol. 194, 171-179.
    Medline Abstract or Full Text
    
    
70. Lohe, A. & Brutlag, D. (1987). Identical satellite DNA sequences in sibling species of Drosophila. J. Mol. Biol. 194, 161-170.
    Medline Abstract or Full Text
    
    
71. Smith, D.H., Brutlag, D.L., Friedland, P. & Kedes, L.H. (1986). Bionet: a national computer resource for molecular biology. Nucleic Acids Res. 14, 17-20.
    Medline Abstract or Full Text
    
    
72. Lohe, A. & Brutlag, D. (1986). Multiplicity of satellite DNA sequences in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 83, 696-700.
    Medline Abstract or Full Text or Proceedings of the National Academy of Sciences
    
    
73. Kornher, S. & Brutlag D. (1986). Proximity-Dependent Gene Enhancement of Sgs-4 Gene Expression. Cell 44, 879-883.
    Medline Abstract or Full Text
    
    
74. Heller, R., Shelton, E., Dietrich, C., Elgin, S. & Brutlag, D. (1986). Multiple forms and cytoplasmic localization of Drosophila DNA topoisomerase II. J. Biol. Chem. 261, 8063-8069.
    Medline Abstract or Full Text
    
    
75. Altenberg, L. and Brutlag, D. (1986), Selection for Modularity in the Genome: Reading Frame Evidence for Exon Shuffling . Unpublished.
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76. Gilson, E., Clement, J. M., Brutlag, D.L. & Hofnung, M. (1984). A family of dispersed repetitive extragenic palindromic DNA sequences in Escherichia coli. EMBO Journal 6, 1417-1421.
    Medline Abstract or Full Text
    
    
77. Dahmus, G. K., Glover, C.V.C., Brutlag, D.L. & Dahmus, M.E. (1984). Similarities in structure and function of calf thymus and Drosophila casein kinase II. J. Biol. Chem. 259, 9001-9006.
    Medline Abstract or Full Text or Journal of Biological Chemistry site
    
    
78. Abarbanel, R.M., Wieneke, P.R., Mansfield, E., Jaffe, D.A. & Brutlag, D.L. (1984). Rapid searches for complex patterns in biological molecules. Nucleic Acids Res. 12, 263-280.
    Medline Abstract or Full Text
    
    
79. Shelton, E.R., Osheroff, N. & Brutlag, D.L. (1983). DNA topoisomerase II from Drosophila melanogaster: Purification and characterization. J. Biol. Chem. 258, 9530-9535.
    Medline Abstract or Full Text or Journal of Biological Chemistry site
    
    
80. Osheroff, N., Shelton, E.R. & Brutlag, D.L. (1983). DNA topoisomerase II from Drosophila melanogaster: Kinetics of relaxation of supercoiled DNA. J. Biol. Chem. 258, 9536-9543.
    Medline Abstract or Full Text or Journal of Biological Chemistry site
    
    
81. Osheroff, N. & Brutlag, D.L. (1983). Recognition of supercoiled DNA by Drosophila DNA topoisomerase II. In Mechanisms in DNA Replication and Recombination, UCLA Symposia on Molecular and Cellular Biology, New York: Alan R. Liss.
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82. Glover, C.V.C., Shelton, E.R. & Brutlag, D.L. (1983). Purification and Characterization of casein kinase II from Drosophila melanogaster. J. Biol. Chem. 258, 3258-3265.
    Medline Abstract or Full Text or Journal of Biological Chemistry site
    
    
83. Friedland, P., Kedes, L.H., Brutlag, D.L., Iwasaki, Y. & Bach, R. (1982). GENESIS: a knowledge-based genetic engineering simulation system for representation of genetic data and experiment planning. Nucleic Acids Res. 10, 323-340.
    Medline Abstract or Full Text
    
    
84. Brutlag, D.L., Clayton, J., Friedland, P. & Kedes, L.H. (1982). SEQ: a nucleotide sequence analysis and recombination system. Nucleic Acids Res. 10, 279-294.
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85. Bach, R., Friedland, P., Brutlag, D.L. & Kedes, L.H. (1982). MAXAMIZE: A DNA sequencing strategy advisor. Nucleic Acids Res. 10, 295-304.
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86. Wiegand, R.C. & Brutlag, D.L. (1981). Histone acetylase from Drosophila melanogaster specific for H4. J. Biol. Chem. 256, 4578-4583.
    Medline Abstract or Full Text or Journal of Biological Chemistry site
    
    
87. Nelson, T., Wiegand, R. & Brutlag, D.L. (1981). RNA and other polyanions facilitate chromatin assembly in vitro. Biochemistry 20, 2594-2601.
    Medline Abstract or Full Text or Biochemistry site
    
    
88. Hsieh, T. & Brutlag, D.L. (1980). ATP dependent DNA topoisomerase reversibly catenates circular DNA. Cell 21, 115-125.
    Medline Abstract or Full Text or Cell site
    
    
89. Brutlag, D.L. (1980). Molecular arrangement and evolution of heterochromatic DNA. Ann. Rev. Genet. 14, 121-144.
    Abstract or Full Text or Annual Review of Genetics site
    
    
90. Nelson, T., Hsieh, T. & Brutlag, D.L. (1979). Extracts of Drosophila embryos mediate chromatin assembly in vitro. Proc. Natl. Acad. Sci. USA 76, 5510-5514.
    Medline Abstract or Full Text or Proceedings of the National Academy of Sciences site
    
    
91. Nelson, T. & Brutlag, D.L. (1979). Additions of homopolymers to ends of duplex DNA. in. Methods in Enzymology Vol 68., 41-50.
    Abstract or Full Text or Methods in Enzymology site
    
    
92. Hsieh, T. & Brutlag, D.L. (1979). A protein that preferentially binds Drosophila satellite DNA. Proc. Natl. Acad. Sci., U.S.A. 76, 726-730.
    Medline Abstract or Full Text or Proceedings of the National Academy of Sciences site
    
    
93. Hsieh, T. & Brutlag, D.L. (1979). Sequence and sequence variation within the 1.688 g/cm satellite DNA of Drosophila melanogaster. J. Mol. Biol. 135,465-481.
    Abstract or Full Text or Journal of Molecular Biology site
    
    
94. Germond, J.E., Rouviere-Yaniv, J., Yaniv, M. & Brutlag, D.L. (1979). The nicking-closing enzyme assembles nucleosome-like structures in vitro. Proc. Natl. Acad. Sci. USA 76, 3779-3783.
    Medline Abstract or Full Text or Proceedings of the National Academy of Sciences site
    
    
95. Fry, K. & Brutlag, D.L. (1979). Detection and resolution of closely related sequences in satellite DNA by molecular cloning. J. Mol. Biol. 135, 581-593.
    Abstract or Full Text or Journal of Molecular Biology site
    
    
96. Carlson, M. & Brutlag, D.L. (1979). Different regions of a complex satellite DNA have different repeating units. J. Mol. Biol. 135, 483-500.
    Abstract or Full Text or Journal of Molecular Biology site
    
    
97. Brutlag, D.L. & Peacock, W.J. (1979). DNA sequences of the 1.672 g/cm satellite of Drosophila melanogaster. J. Mol. Biol. 135, 565-580.
    Abstract or Full Text or Journal of Molecular Biology site
    
    
98. Carlson, M. & Brutlag, D.L. (1978b). One of the copia genes is adjacent to satellite DNA in Drosophila melanogaster. Cell 15, 733-742.
    Medline Abstract or Full Text or Cell site
    
    
99. Carlson, M. & Brutlag, D.L. (1978a). A gene adjacent to satellite DNA in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 75, 5898-5902.
    Medline Abstract or Full Text or Proceedings of the National Academy of Sciences site
    
    
100. Brutlag, D.L., Carlson, M., Fry, K. & Hsieh, T. (1978). DNA sequence organization in Drosophila heterochromatin. Cold Spring Harbor Symp. Quant. Biol. 42, 1137-1146.
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101. Rubenstein, J., Brutlag, D.L. & Clayton, D. (1977). The mitochondrial DNA of Drosophila melanogaster exists in two distinct and stable superhelical forms. Cell 12, 471-482.
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102. Carlson, M. & Brutlag, D.L. (1977). Cloning and characterization of a complex satellite DNA from Drosophila melanogaster. Cell 11, 371-381.
     Abstract or Full Text or Cell site
     
     
103. Brutlag, D.L. (1977c). The highly repeated DNA sequences of Drosophila melanogaster. In The Molecular Biology of the Mammalian Genetic Apparatus, New York: North-Holland Publishing. pp. 43-50.
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104. Brutlag, D.L., Fry, K., Nelson, T. & Hung, P. (1977b). Synthesis of hybrid bacterial plasmids containing highly repeated satellite DNA. Cell 10, 509-519.
     Medline Abstract or Full Text or Cell site
     
     
105. Brutlag, D.L., Appels, R., Dennis, E.S. & Peacock, W.J. (1977a). The highly repeated DNA sequences of Drosophila melanogaster. J. Mol. Biol. 112, 31-47.
     Medline Abstract or Full Text or Journal of Molecular Biology site
     
     
106. Goldring, E. S., Brutlag, D. L., & Peacock, W. J. (1975). Arrangement of the highly repeated DNA of Drosophila melanogaster. In Peacock. WJ, & Brock, RD (Ed.), The eukaryote chromosome. (pp. 47-59.). Canberra Australia: Australian University Press.
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107. Brutlag, D. L., & Peacock, W. J. (1975). Sequences of highly repeated DNA in Drosophila melanogaster. In Peacock. WJ, & Brock. RD (Ed.), The eukaryote chromosome. (pp. 35-45.). Canberra Australia: Australian University Press.
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108. Peacock, W.J., Brutlag, D.L., Goldring, E., Appels, R., Hinton, C.W. & Lindsley, D.L. (1974). The organization of highly repeated DNA sequences in Drosophila melanogaster chromosomes. Cold Spring Harbor Symp. Quant. Biol. 38, 405-416.
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109. Westergaard, O., Brutlag, D.L.,Schekman, R. & Kornberg, A. (1973). Initiation of DNA synthesis IV. Incorporation of the RNA primer into the phage replicative form. J. Biol. Chem. 248, 1361-1363.
     Abstract or Full Text or Journal of Biological Chemistry site
     
     
110. Wickner, W., Brutlag, D.L., Schekman, R. & Kornberg, A. (1972). RNA synthesis initiates in vitro conversion of M13 DNA to its replicative form. (1972). Proc. Natl. Acad. Sci. USA 69, 965-969.
     Abstract or Full Text or Proceedings of the National Academy of Sciences site
     
     
111. Setlow, P., Brutlag, D.L. & Kornberg, A. (1972). Deoxyribonucleic acid polymerase: two distinct enzymes in one polypeptide. I. A proteolytic fragment containing the polymerase and 3' to 5' exonuclease function J. Biol. Chem. 247, 224-231.
     Abstract or Full Text or Journal of Biological Chemistry site
     
     
112. Schekman, R., Wickner, W., Westergaard, O., Brutlag, D.L., Geider, K., Bertsch, L. & Kornberg, A. (1972). Initiation of DNA synthesis requires RNA synthesis resistant to rifampicin. Proc. Natl. Acad. Sci. USA 69, 2691-2695.
     Abstract or Full Text or Proceedings of the National Academy of Sciences site
     
     
113. Brutlag, D.L. & Kornberg, A. (1972). Enzymatic synthesis of DNA XXXVI: A proofreading function for the 3' to 5' exonuclease activity in DNA polymerases. J. Biol. Chem. 247, 241-248.
     Abstract or Full Text or Journal of Biological Chemistry site
     
     
114. Brutlag, D. (1972). Enzymatic mechanisms in DNA replication. Ph.D. Thesis. Stanford: Stanford University. Dept. of Biochemistry, vii plus 82 pages.
116. Brutlag, D.L., Schekman, R. & Kornberg, A. (1971). A possible role for RNA polymerase in the initiation of M13 DNA synthesis. Proc. Natl. Acad. Sci. USA 68, 2826-2829.
     Abstract or Full Text or Proceedings of the National Academy of Sciences site
     
     
117. Brutlag, D.L., Schlehuber, C. & Bonner, J. (1969). Properties of formaldehyde treated nucleohistone. Biochemistry 8, 3214-3218.
     Abstract or Full Text or Biochemistry site
     
     
118. Brutlag, D.L., Atkinson, M., Setlow, P. & Kornberg, A. (1969). An active fragment of DNA polymerase produced by proteolytic cleavage. Biochem. Biophys. Res. Commun. 37, 982-989.
     Abstract or Full Text or Biochemical & Biophysical Research Communications site
     
     
119. Marushige, K., Brutlag, D.L. & Bonner, J. (1968). Properties of Chromosomal nonhistone proteins of rat liver. Biochemistry 7, 3149-3155.
     Abstract or Full Text: or Biochemistry site
     

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