sp|P09349|MOTB_ECOLI CHEMOTAXIS MOTB PROTEIN (MOTILITY PROTEIN B) >gi|146883 (J01652)
motB protein for chemotaxis [Escherichia coli]
>gi|1736548|gnl|PID|d1016434 (D90831) Chemotaxis MotB
protein (Motility protein B). [Escherichia coli]
>gi|1788198 (AE000282) motility protein B [Escherichia
coli]
Length = 308
Score = 437 bits (1113), Expect = e-122
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAE 60
MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAE
Sbjct: 1 MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAE 60
Query: 61 YFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRG 120
YFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRG
Sbjct: 61 YFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRG 120
Query: 121 DLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIA 180
DLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIA
Sbjct: 121 DLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIA 180
Query: 181 PVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVG 240
PVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVG
Sbjct: 181 PVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVG 240
Query: 241 MAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVSVP 300
MAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVSVP
Sbjct: 241 MAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVSVP 300
Query: 301 TMPSAEPR 308
TMPSAEPR
Sbjct: 301 TMPSAEPR 308
sp|P55892|MOTB_SALTY CHEMOTAXIS MOTB PROTEIN (MOTILITY PROTEIN B) >gi|1764128 (U81861)
MotB [Salmonella typhimurium]
Length = 309
Score = 425 bits (1080), Expect = e-118
Identities = 280/309 (90%), Positives = 294/309 (94%), Gaps = 1/309 (0%)
Query: 1 MKNQAHPIIVVKRRKAKSHGA-AHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59
MKNQAHPI+VVKRR+ K HG AHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA
Sbjct: 1 MKNQAHPIVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 60
Query: 60 EYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLR 119
EYFRTPLATAVTGG+RI+NSESPIPGGGDDYTQ QGEV KQPNI+ELKKRMEQSRL KLR
Sbjct: 61 EYFRTPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRLNKLR 120
Query: 120 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAI 179
GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMF+TGSA+VEPYMRDILRAI
Sbjct: 121 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI 180
Query: 180 APVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVV 239
APVLNGIPNRISL+GHTDDFPYA+GEKGYSNWELSADRANASRREL+ GGLD+GKVLRVV
Sbjct: 181 APVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVV 240
Query: 240 GMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVSV 299
GMAATMRLSDRGPDDA+NRRISLLVLNKQAEQAILHENAESQNEPVS L++P AP SV
Sbjct: 241 GMAATMRLSDRGPDDAINRRISLLVLNKQAEQAILHENAESQNEPVSVLQQPAAAPPASV 300
Query: 300 PTMPSAEPR 308
PT P AEPR
Sbjct: 301 PTSPKAEPR 309
pir||QRECMB chemotaxis protein motB - Escherichia coli
Length = 358
Score = 386 bits (982), Expect = e-107
Identities = 271/309 (87%), Positives = 273/309 (87%), Gaps = 13/309 (4%)
Query: 1 MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAE 60
MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAE
Sbjct: 1 MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAE 60
Query: 61 YFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRG 120
YFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRG
Sbjct: 61 YFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRG 120
Query: 121 DLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEP----YMRDIL 176
DLDQLIESDPKLRALRPHLKIDLVQEGLRIQIID +P F P Y R
Sbjct: 121 DLDQLIESDPKLRALRPHLKIDLVQEGLRIQIID---KPEFARCLEPAVPCRTLYARHSA 177
Query: 177 RAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVL 236
IAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADR NASRRELMVGGLDSGKVL
Sbjct: 178 -RIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRVNASRRELMVGGLDSGKVL 236
Query: 237 RVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALE-----KP 291
RVVGMAATMRLSD GPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSAL+
Sbjct: 237 RVVGMAATMRLSDAGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALKNLRLHHR 296
Query: 292 EVAPQVSVP 300
V PQ P
Sbjct: 297 SVFPQCHQP 305
sp|Q03478|LAFU_VIBPA CHEMOTAXIS LAFU PROTEIN >gi|677910 (U20541) LafU [Vibrio
parahaemolyticus] >gi|1518954 (U52957) LafU [Vibrio
parahaemolyticus]
Length = 330
Score = 319 bits (810), Expect = 1e-86
Identities = 94/316 (29%), Positives = 153/316 (47%), Gaps = 21/316 (6%)
Query: 1 MKNQAHPIIVVKRRKAKSHGAAHGS-WKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59
M+ Q H +V KR KA H HG WK+A+ADFM A+MA FLV+W++ + +E I
Sbjct: 1 MQKQEH--VVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIV 58
Query: 60 EYFRTPLATAVTGGDRISNSES--PIPGGGDDYTQSQGEVNKQ-----------PNIEEL 106
+ + + G+ S+S PI D S+ N P I L
Sbjct: 59 AHLHSSSVFDKSYGNPFDTSQSISPIDLAQDSSVPSKHNSNHVVSSYFQGDGDGPEINSL 118
Query: 107 KKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSA 166
++ + L ++IE + ++ + + +GLRI + D + MF G A
Sbjct: 119 VPGTFDTQ--EQLAALAKVIEEMTAQINAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGA 176
Query: 167 DVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELM 226
++ P+ D+L A+AP+ + N + +SGHTD P+ SNW LSA RA+ +R+ L+
Sbjct: 177 ELTPFFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQSNWALSASRADVARKTLV 236
Query: 227 VGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVS 286
GG+ +V++V GM+ L+ PD + NRRI L +L A + + N+ S
Sbjct: 237 EGGMPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFILTTPAAKVL---ETLFGNQDDS 293
Query: 287 ALEKPEVAPQVSVPTM 302
L+K + + + P +
Sbjct: 294 ELQKAKQKAEFNQPVI 309
gnl|PID|d1034518 (AB012767) ORF2 [Pseudomonas aeruginosa]
Length = 296
Score = 303 bits (768), Expect = 9e-82
Identities = 80/305 (26%), Positives = 127/305 (41%), Gaps = 30/305 (9%)
Query: 12 KRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVT 71
+RR+ + H W ++YADF+T + AFF+VM+ IS I E L+ +T
Sbjct: 3 RRRRHQEEHENHERWLVSYADFITLLFAFFVVMYSISS--------INEGKYKILSETLT 54
Query: 72 G-GDRISNSESPIPGGGDDYTQSQGE---VNKQPNIEELKKRMEQSRLRKLRGDLDQLIE 127
G ++ S PIP G + ++ E V +QP+ + +R LI
Sbjct: 55 GVFNQPDRSLKPIPIGDERPRTTEPERTSVEEQPSDNAASADSLERIADSVRDAFGDLIA 114
Query: 128 SDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIP 187
S +L L I+ I + +F +G A DI+ +A +L
Sbjct: 115 S-DQLSVRGNELWIE----------ITLNSSLLFPSGDALPNDAAFDIVEKVAKILAPYK 163
Query: 188 NRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRL 247
N I + G TDD P S + +NWELSA RA + R L G++ + + VG +
Sbjct: 164 NPIHVEGFTDDVPIHS-PRYPTNWELSAARAASIVRLLGNDGVEPSR-MAAVGYGEFQPV 221
Query: 248 SDR--GPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKP-EVAPQVSVPT--M 302
+D A NRR+ L++ + + + +P SAL A + T
Sbjct: 222 ADNASAEGRAKNRRVVLVISRNLEVRRSVSGVGSGKAQPDSALRHAGSAAGTQAADTGGT 281
Query: 303 PSAEP 307
P+ P
Sbjct: 282 PAPAP 286
gi|2853603 (AF031898) MotB [Pseudomonas putida]
Length = 285
Score = 299 bits (757), Expect = 2e-80
Identities = 74/300 (24%), Positives = 126/300 (41%), Gaps = 26/300 (8%)
Query: 11 VKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAV 70
++RR+ H W ++YADF+T + AFF+VM+ IS I E ++ A+
Sbjct: 1 MRRRRHTEEHENHERWLVSYADFITLLFAFFVVMYSISS--------INEGKYKVISQAL 52
Query: 71 TG-GDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESD 129
G + S PIP G + + E L K EQ+ ++D L
Sbjct: 53 LGVFNDPERSMKPIPIGDEQPLSVRPA-------EPLVKDSEQTEAGLAATNVDPLKTIS 105
Query: 130 PKLRALRPHL--KIDLVQEGLRIQI-IDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGI 186
+R L + G + I I+ + +F +G A I+ +A +L
Sbjct: 106 DDVRDAFGDLINSNQMTVRGNELWIEIELSSSLLFGSGDAMPSDKAFAIIDKVASILKPF 165
Query: 187 PNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMR 246
N + + G TD+ P + + +NWELS+ RA + R L + G++ ++ V G
Sbjct: 166 ANPVHVEGFTDNLPIRTAQ-YPTNWELSSARAASIVRLLAMEGVNPARMASV-GYGEYQP 223
Query: 247 L--SDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVSVPTMPS 304
+ +D A NRR+ L++ + L + + P +AL + A S P P+
Sbjct: 224 VAGNDTAEGRARNRRVVLVISRNLEVRRSLTGSGSAHATPDAALRR---AGTQSAPATPA 280
gi|2738159 (U91841) MotB homolog [Bacillus firmus]
Length = 258
Score = 255 bits (646), Expect = 2e-67
Identities = 61/269 (22%), Positives = 112/269 (40%), Gaps = 37/269 (13%)
Query: 11 VKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRT------ 64
+KRR+ + A W + ++D MT ++ FF++++ +S+ ++ I+E F+
Sbjct: 7 MKRRRRQQEKGA-PKWMVTFSDMMTLILVFFILLFSMSVVDAQKFRAISESFQQRQVFEF 65
Query: 65 -PLATAVTGGDRISNSESPIP---GGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRG 120
P A E P P GG + + EV+ +EE+++ +E +
Sbjct: 66 FPSAIEFENPSEEFGEEFPNPFDEGGFSEEGSNTDEVDMDELLEEVQEFLEVN------- 118
Query: 121 DLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIA 180
E + + A R ++ Q R +F T A++ L +
Sbjct: 119 ------EMNDVISA----------TRDDRGVVLVLQERTLFETAEAELLDSAEPFLEKVG 162
Query: 181 PVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVG 240
+L+ IPN + + GHTD P S + SNWELS RA++ R L+ K G
Sbjct: 163 TLLSAIPNMVKVEGHTDSRPI-SNFRYPSNWELSGARASSVIRYLVETNDLDPKRFIATG 221
Query: 241 MAATMRLSDRG--PDDAVNRRISLLVLNK 267
T + + +NRR+ +++ +
Sbjct: 222 YGDTRPVVPNTTVENLQLNRRVVIVISDP 250
sp|P28612|MOTB_BACSU CHEMOTAXIS MOTB PROTEIN (MOTILITY PROTEIN B) >gi|477662|pir||B42882
motility protein B - Bacillus subtilis >gi|143208
(M77238) motility protein B [Bacillus subtilis]
>gi|2633739|gnl|PID|e1184958 (Z99111) motility protein B
[Bacillus subtilis]
Length = 261
Score = 250 bits (633), Expect = 6e-66
Identities = 71/271 (26%), Positives = 118/271 (43%), Gaps = 22/271 (8%)
Query: 11 VKRRKAKSHGAAH--GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLAT 68
+ R+K K H H SW + YAD +T ++A F+V++ S + +++ F
Sbjct: 1 MARKKKKKHEDEHVDESWLVPYADILTLLLALFIVLYASSSIDAAKFQMLSKSFNEV--- 57
Query: 69 AVTGGDRISNSESPIP----GGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQ 124
TGG + + S P G D + + E K+ N +E +K +Q L ++ +++
Sbjct: 58 -FTGGTGVLDYSSVTPPENESDGIDEVKKEKE-EKEKNKKEKEKAADQEELENVKSQVEK 115
Query: 125 LIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVL- 183
I K + L L+ + EGL I I D F +G A + + + I+ +L
Sbjct: 116 FI----KDKKLEHQLETKMTSEGLLITIKD---SIFFDSGKATIRKEDVPLAKEISNLLV 168
Query: 184 NGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAA 243
P I +SGHTD+ P + E SNW LS RA L+ KV G
Sbjct: 169 INPPRNIIISGHTDNMPIKNSE-FQSNWHLSVMRAVNFMGLLIENPKLDAKVFSAKGYGE 227
Query: 244 TMRL--SDRGPDDAVNRRISLLVLNKQAEQA 272
+ + + NRR+ +L+L + A +
Sbjct: 228 YKPVASNKTAEGRSKNRRVEVLILPRGAAET 258
gi|1786424 (AE000131) o211; Residues 2-211 are 100 pct identical to
hypothetical protein MbhA GB: ECODINJ_10 ACCESSION:
D38582; Residues 51-211 are 100 pct identical to
residues 1-161 of 161 aa hypothetical protein GB:
ECOTSF_38 ACCESSION: D83536 [Esch...
Length = 261
Score = 243 bits (614), Expect = 1e-63
Identities = 77/259 (29%), Positives = 128/259 (48%), Gaps = 19/259 (7%)
Query: 48 SISSPKELIQIAEYFRTPLATA---VTGGDRISNSESPIPGG---GDDYTQSQGEVNKQP 101
+ S E I ++ ++IS S P P ++ + +VN++
Sbjct: 9 NSVSKSERESIIAALHGQSIFNGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKT 68
Query: 102 NIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMF 161
+ + K E G+L I + + + +L++++V +GLR+ I D QNR MF
Sbjct: 69 ALLKKKSATEL-------GELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMF 121
Query: 162 RTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANAS 221
GSA + P+ + +L +APV + + N+I ++GHTD Y + Y+NW LS DRA ++
Sbjct: 122 ERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNN--IYNNWNLSGDRALSA 179
Query: 222 RRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILH---ENA 278
RR L G+ KV++V MA M L + P A NRRI ++VL K A + ++
Sbjct: 180 RRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHG 239
Query: 279 ESQNEP-VSALEKPEVAPQ 296
+ +P V L+K +V Q
Sbjct: 240 DKVVQPLVQKLDKQQVLSQ 258
gnl|PID|d1021104 (AB004068) PomB [Vibrio alginolyticus]
Length = 315
Score = 242 bits (612), Expect = 2e-63
Identities = 68/298 (22%), Positives = 119/298 (39%), Gaps = 53/298 (17%)
Query: 18 SHGAAHGS---WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFR----------- 63
W +AD M+ +M FF+++ S + QIA +
Sbjct: 7 KCDCPPPGLPLWMGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNQLEV 66
Query: 64 -------TPLATAVTGGDRI----------------------SNSESPIPGGGDDYTQS- 93
+ +A G G D +
Sbjct: 67 KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTMDITQQTLEFHEGESDRAGGTKRDEGKLT 126
Query: 94 --QGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQ 151
Q N E + M+Q + +++ +++ L+ES K AL ++ ++ Q
Sbjct: 127 GGQSPATSTQNNESAEADMQQQQSKEMSQEMETLMESIKK--ALEREIEQGAIEVENLGQ 184
Query: 152 --IIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYS 209
+I + + F GSA ++P R ++R IA ++ +P + +SGHTD+ P S E S
Sbjct: 185 QIVIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRVSGHTDNRPLDS-ELYRS 243
Query: 210 NWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRL--SDRGPDDAVNRRISLLVL 265
NW+LS+ RA + +E+ S + LRV GMA T L +D + A+NRR+ + ++
Sbjct: 244 NWDLSSQRAVSVAQEMEKVRGFSHQRLRVRGMADTEPLLPNDSDDNRALNRRVEISIM 301
gi|2983507 (AE000718) flagellar motor protein MotB [Aquifex aeolicus]
Length = 235
Score = 236 bits (596), Expect = 1e-61
Identities = 51/251 (20%), Positives = 93/251 (36%), Gaps = 30/251 (11%)
Query: 15 KAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGD 74
K K +W ++ D M+ ++ FF++++ +SI S ++ Q+ + + G
Sbjct: 4 KKKEECPKPPAWLTSFGDLMSLLLTFFILLYSMSIISLEKFYQVLKGI-----VSAFGAQ 58
Query: 75 RISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRA 134
+ E +P G ++ ME RK++ + + + K
Sbjct: 59 SVVFEEGTMPEG-----------------RRIEIPMENFHFRKIKYKELKKVAQEIKAEM 101
Query: 135 LRPHLKID--LVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISL 192
+ + D L E LRI++ F G + + ++ + L + +
Sbjct: 102 SKRGIWSDYALTGECLRIRV---NTDKFFPPGEDTLMKEAKGLILGLCYKLKPYALPVDI 158
Query: 193 SGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMR--LSDR 250
GHTD+ P S + SNWELS RA + L +G A T +D
Sbjct: 159 EGHTDNRPI-STPRFPSNWELSMARAISVIEVFEKECGYPSDKLSALGYADTKPIASNDT 217
Query: 251 GPDDAVNRRIS 261
NRR+
Sbjct: 218 PQGRQKNRRVE 228
sp|P39064|YTXE_BACSU HYPOTHETICAL 27.6 KD PROTEIN IN ACUC 5'REGION (ORFB)
>gi|481845|pir||S39642 hypothetical protein b - Bacillus
subtilis >gi|348049 (L17309) putative [Bacillus
subtilis] >gi|2293223 (AF008220) YtxE [Bacillus
subtilis] >gi|2635456|gnl|PID|e1185845 (Z99119) similar
to motility protein [Bacillus subtilis]
Length = 242
Score = 234 bits (591), Expect = 5e-61
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 34/256 (13%)
Query: 12 KRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVT 71
+R + + + SW + + D +T ++ FF++++ +S ++ + +
Sbjct: 10 RRNGSGKNSQSSSSWMVTFTDLITLILVFFILLFSMSQIDLQKFKAAVDSIQK------- 62
Query: 72 GGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPK 131
N P Q +IE KK S +K DQL++
Sbjct: 63 ----EGNGLQP----------------DQTSIE--KKNTSPSDTKKQEDQQDQLLKKV-N 99
Query: 132 LRALRPHLKIDLV-QEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRI 190
HLK + + R ++ Q +F TG A V +L IA +L IPN I
Sbjct: 100 TYIKDNHLKAQMTAKRDERGVVLVLQEAVLFDTGEAKVLKNAETLLHQIAVLLQTIPNDI 159
Query: 191 SLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDR 250
+ GHTD S + SNWELSA RA+ + K VG A T + D
Sbjct: 160 QVEGHTDSRNI-STYRYPSNWELSAARASGVIQYFTSKEKLPSKRFIAVGYADTKPVKDN 218
Query: 251 GPDDAV--NRRISLLV 264
++ + NRR+ +++
Sbjct: 219 KTNEHMKENRRVEIVI 234
sp|P46827|YTXE_BACME HYPOTHETICAL 24.6 KD PROTEIN IN CCPA 3'REGION (ORF2)
>gi|2126811|pir||I39802 motB protein homologue -
Bacillus megaterium >gi|415666 (L26052) homologue to
motB; ORF2; putative [Bacillus megaterium]
Length = 218
Score = 234 bits (590), Expect = 7e-61
Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 46/262 (17%)
Query: 11 VKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAV 70
+KRR+ + + A W + +AD +T ++ FF++++ +S ++ +T + +
Sbjct: 1 MKRRRKR-YSAQSPKWMVTFADLVTLILVFFILLFSMSSVDNQKF-------QTVVNSLT 52
Query: 71 TGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDP 130
+GG S +S QSQ N L K++G L
Sbjct: 53 SGGSLASVEKSQ---------QSQKLDN---------------ILAKVQGYL-------- 80
Query: 131 KLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRI 190
K L+ + R ++ Q + +F TG AD+ L + + + IPN I
Sbjct: 81 KENKLQHVITAK---RDERGVVLILQEQVLFETGQADILKKGTPFLDELGRLFSTIPNDI 137
Query: 191 SLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDR 250
+ GHTD+ P SNWELSA RA+ R L S +G T L
Sbjct: 138 KVEGHTDNRPIH-TYAYPSNWELSAARASGVIRYLTNHFSLSANRFEALGYGDTKPLVPN 196
Query: 251 GPDD--AVNRRISLLVLNKQAE 270
+D NRR+ +++ + +A+
Sbjct: 197 TSNDNLQKNRRVEIIISDPEAQ 218
gi|1399286 (U32475) MotB [Treponema phagedenis]
Length = 238
Score = 222 bits (561), Expect = 2e-57
Identities = 62/260 (23%), Positives = 103/260 (38%), Gaps = 33/260 (12%)
Query: 14 RKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGG 73
RK K A W Y+D +T M+ FF++++ S I I + ++ TGG
Sbjct: 3 RKKKQAAGASSGWLTTYSDMVTLMLCFFVMVYSPSDVD----ITILQSMAASISGDPTGG 58
Query: 74 DRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLR 133
+S G +D + +N P++E+ KK + L+K I+++
Sbjct: 59 -----GQSVSIGRLEDLGNT---INAMPSLEKGKK--LGTALKKAVSLFAPEIKTNK--- 105
Query: 134 ALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVE-PYMRDILRAIAPVLNGI---PNR 189
V R +I F S+D++ R+ L IA L+ R
Sbjct: 106 --------IAVTSDERGLVISLAADAFFHRDSSDLDIEETRESLLHIARFLSDKELEGRR 157
Query: 190 ISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMR--L 247
+ GHT A K +W+LS+ RA L G + + V G A T
Sbjct: 158 FRVEGHTSTSEVA-ASKEIDDWQLSSQRAINVLHYLTDFGAEESR-FSVAGYADTRPKAS 215
Query: 248 SDRGPDDAVNRRISLLVLNK 267
+D A NRR+ +++L++
Sbjct: 216 NDTAEGRAYNRRVDIIILDE 235
sp|Q47154|MBHA_ECOLI MBHA PROTEIN >gi|984586|gnl|PID|d1008173 (D38582) MbhA [Escherichia
coli] >gi|1552798 (U70214) MbhA [Escherichia coli]
Length = 211
Score = 221 bits (558), Expect = 4e-57
Identities = 69/214 (32%), Positives = 115/214 (53%), Gaps = 13/214 (6%)
Query: 87 GDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQE 146
++ + +VN++ + + K E G+L I + + + +L++++V +
Sbjct: 4 PEETEKKARDVNEKTALLKKKSATEL-------GELATSINTIARDAHMEANLEMEIVPQ 56
Query: 147 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEK 206
GLR+ I D QNR MF GSA + P+ + +L +APV + + N+I ++GHTD Y +
Sbjct: 57 GLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNN-- 114
Query: 207 GYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLN 266
Y+NW LS DRA ++RR L G+ KV++V MA M L + P A NRRI ++VL
Sbjct: 115 IYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRIEIMVLT 174
Query: 267 KQAEQAILH---ENAESQNEP-VSALEKPEVAPQ 296
K A + ++ + +P V L+K +V Q
Sbjct: 175 KSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQ 208
sp|O07887|MOTB_TREPA CHEMOTAXIS MOTB PROTEIN (MOTILITY PROTEIN B) >gi|2196896 (U28219)
MotB [Treponema pallidum] >gi|3323025 (AE001244)
flagellar motor rotation protein (motB) [Treponema
pallidum]
Length = 238
Score = 210 bits (529), Expect = 1e-53
Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 34/263 (12%)
Query: 11 VKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAV 70
+ R++ GAA G W Y+D +T M+ FF++++ + I + + +
Sbjct: 1 MARKRRAPRGAAQG-WLTTYSDMVTLMLCFFVMLFNPTEVD----ITVLQSIAASIVGDP 55
Query: 71 TGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDP 130
TGG +S S + G+ VN P++E+ +K + L+K I+S+
Sbjct: 56 TGGG-VSASSGRLADLGN-------TVNTLPSLEKGQK--LATALKKAVSLFAPEIKSNK 105
Query: 131 KLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVE-PYMRDILRAIAPVLNG---I 186
V R +I + F GS+D+ R+ L +A L+
Sbjct: 106 -----------IAVTSDERGLVISLTSDSFFYPGSSDLNVEESREALLRVAQFLSDHALA 154
Query: 187 PNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMR 246
R + GHTD + NWELS RA L G + + G A T
Sbjct: 155 GRRFRIEGHTDSVEVPE-DGSTDNWELSTRRAVRVLHYLTDFGAQENR-FSLAGYADTRA 212
Query: 247 --LSDRGPDDAVNRRISLLVLNK 267
++ A NRR+ +++L++
Sbjct: 213 KFSNESPEGRAYNRRVDIVILDE 235
gi|1165265 (U43739) MotB [Borrelia burgdorferi] >gi|1185054 (L75945) flagellar
motor apparatus [Borrelia burgdorferi] >gi|2688186
(AE001137) flagellar motor rotation protein B (motB)
[Borrelia burgdorferi]
Length = 260
Score = 204 bits (514), Expect = 6e-52
Identities = 58/268 (21%), Positives = 106/268 (38%), Gaps = 36/268 (13%)
Query: 12 KRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLIS-ISSPKELIQIAEYFRTPLATAV 70
+ +K + + Y D +T ++ FF+ M+ ++ I + +I+I ++ +
Sbjct: 4 RIKKPSKCDEGSPDYMLTYGDMVTLLLVFFVTMFSLNDIIFQENVIRI-------MSASF 56
Query: 71 TGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDP 130
TG ++ D+++ N ++ + + S+ K + +IE
Sbjct: 57 TGAGFFKGGKTL------DFSKLSYLSNSFMSLPSTVRNKQASQTAKNKS----MIEFIE 106
Query: 131 KLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADV-EPYMRDILRAIAPV---LNGI 186
K+++ K +V++ R +I F + SADV RD ++ IA L+
Sbjct: 107 KIQS-----KNIVVRQEERGIVISLAADAFFDSASADVKLEENRDSIQKIASFIGFLSPR 161
Query: 187 PNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKV------LRVVG 240
+ GHTD+ SNWELSA R+ E ++ LD V V G
Sbjct: 162 GYNFKIEGHTDNIDTDVNGPWKSNWELSAARSVN-MLEHILNYLDQSDVKRIENNFEVSG 220
Query: 241 MAATMR--LSDRGPDDAVNRRISLLVLN 266
+ D A NRRI +L+
Sbjct: 221 FGGSRPIATDDTPEGRAYNRRIDILITT 248
sp|P56427|MOTB_HELPY CHEMOTAXIS MOTB PROTEIN (MOTILITY PROTEIN B) >gi|2313948 (AE000593)
flagellar motor rotation protein (motB) [Helicobacter
pylori]
Length = 257
Score = 203 bits (511), Expect = 1e-51
Identities = 43/262 (16%), Positives = 98/262 (36%), Gaps = 34/262 (12%)
Query: 11 VKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAV 70
+ ++ + A W + YADF++ ++A F+ ++ IS + ++ + F
Sbjct: 1 MAKKNKPTECPAGEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKI----F 56
Query: 71 TGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRK--LRGDLDQLIES 128
+ + + D G+ +Q E K + + + R ++E
Sbjct: 57 NYAPKPEAMQPVVVIPPD-----SGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQ 111
Query: 129 DPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSAD-VEPYMRDILRAIAPVLNGIP 187
+ I+ + +F ++D + M + IA ++ +P
Sbjct: 112 IDQ------------------GSILKLPSNLLFENATSDAINQDMMLYIERIAKIIQKLP 153
Query: 188 NRIS--LSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKV-LRVVGMAAT 244
R+ + G TDD P + S++EL+A+RA + L+ G++ ++ G
Sbjct: 154 KRVHINVRGFTDDTPLVKT-RFKSHYELAANRAYRVMKVLIQYGVNPNQLSFSSYGSTNP 212
Query: 245 MRLSDRGPDDAVNRRISLLVLN 266
+ +D + N R+ +
Sbjct: 213 IAPNDSLENRMKNNRVEIFFST 234
gi|2983508 (AE000718) flagellar motor protein MotB-like [Aquifex aeolicus]
Length = 224
Score = 192 bits (482), Expect = 3e-48
Identities = 43/262 (16%), Positives = 82/262 (30%), Gaps = 46/262 (17%)
Query: 15 KAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGD 74
K K +W +++D M+ ++ FF++++ +S L + YFR
Sbjct: 4 KKKEECPKPPAWLTSFSDLMSLLLTFFILLYAMSTLEIPALEKFLSYFRK---------- 53
Query: 75 RISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRA 134
P + + + ++ + K+
Sbjct: 54 ---------------------NPELYPPKNSVVPPITHP-----KDYAVKIKKRISKV-- 85
Query: 135 LRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRI---S 191
L P V + +R F G + R L IAP+L + + I
Sbjct: 86 LPP--WAYQVVVAEEYIKLRLFDRIFFENGDYKLTEKGRKTLEEIAPLLIALSDEISSIR 143
Query: 192 LSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS--D 249
+ GH + WEL+ RA R L G+ K++ V L
Sbjct: 144 VEGHVGPTVEIKNPIIRNKWELAGRRATEVIRYLENRGVPHDKLVAVS-YGDKRPLYRWR 202
Query: 250 RGPDDAVNRRISLLVLNKQAEQ 271
+ N R+ + + K+ ++
Sbjct: 203 QSVLIERNNRVEINIYVKREKK 224
pir||F40590 motB homolog lafU - Vibrio parahaemolyticus (fragment)
Length = 202
Score = 191 bits (480), Expect = 5e-48
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 1 MKNQAHPIIVVKRRKAKSHGAAHGS-WKIAYADFMTAMMAFFLVMWLISISSPKELIQIA 59
M+ Q H +V KR KA H HG WK+A+ADFM A+MA FLV+W++ + +E I
Sbjct: 1 MQKQEH--VVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLWVMQVVDKEERKAIV 58
Query: 60 EYFRTPLATAVTGGDRISNSE--SPIPGGGDDYTQSQGEVNKQ-----------PNIEEL 106
+ + + G+ S+ SPI D S+ N P I L
Sbjct: 59 AHLHSSSVFDKSYGNPFDTSQSISPIDLAQDSSVPSKHNSNHVVSSYFQGDGDGPEINSL 118
Query: 107 KKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSA 166
++ + L ++IE + ++ + + +GLRI + D + MF G A
Sbjct: 119 VPGTFDTQ--EQLAALAKVIEEMTAQINAQGNVNVTVTPQGLRIVLQDDYKQHMFSRGGA 176
Query: 167 DVEPYMRDILRAIAPVLNGIPNRIS 191
++ P+ D+L A+AP+ + N +
Sbjct: 177 ELTPFFEDLLLALAPLFEQVTNPLI 201
gnl|PID|d1012650 (D83536) unknown [Escherichia coli]
Length = 161
Score = 191 bits (480), Expect = 5e-48
Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 141 IDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFP 200
+++V +GLR+ I D QNR MF GSA + P+ + +L +APV + + N+I ++GHTD
Sbjct: 1 MEIVPQGLRVLIKDDQNRNMFERGSAKIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMA 60
Query: 201 YASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRI 260
Y + Y+NW LS DRA ++RR L G+ KV++V MA M L + P A NRRI
Sbjct: 61 YKNN--IYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRI 118
Query: 261 SLLVLNKQAEQAILH---ENAESQNEP-VSALEKPEVAPQ 296
++VL K A + ++ + +P V L+K +V Q
Sbjct: 119 EIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQ 158
gi|2275156 (L49337) MotB [Sinorhizobium meliloti]
Length = 394
Score = 155 bits (389), Expect = 3e-37
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 88 DDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEG 147
D N Q E LK +E ++L G+ +L+E L + + G
Sbjct: 229 DAPENQAPAENPQKEAEALKAEIE----KELGGEAGRLLEG----------LAVTPAEGG 274
Query: 148 LRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKG 207
L + I + + PMF GSA + + + I +L P +++ GHTD P+ G
Sbjct: 275 LLVTISEQTDAPMFAVGSAVPQKELVLAMEKIGRLLAERPGAVAVRGHTDGRPFKDGT-- 332
Query: 208 YSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNK 267
Y NW LSA RA ++ L+ GGL+ +V ++ G A NRRI +L+ +
Sbjct: 333 YDNWRLSAARAQSAYYMLVRGGLEEERVKQISGFADRRLQVPNDAYAPANRRIEILLQSG 392
Query: 268 Q 268
Q
Sbjct: 393 Q 393
Score = 93.5 bits (229), Expect = 1e-18
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 9 IVVKRRKAKSHGAAHGS-WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLA 67
I++ RR A SH HG WKIAYADFMTAMMAFFLVMWLI+ ++ + IA YF
Sbjct: 13 IIIVRRSADSHDGHHGGGWKIAYADFMTAMMAFFLVMWLINAANEETKAAIAAYFNPVQL 72
Query: 68 TAVTGGDRISNSESPIPGGGDDYTQSQGEV--NKQPNIEELKKRMEQSRL 115
T ++ + P + TQ + +V + + K + +
Sbjct: 73 TDQKPAEK--GLKDPAKDAQGEQTQQRSKVDGEQTKSGGSAKTGDQLTAT 120
pir||A57140 motB protein homolog - Rhodobacter sphaeroides >gi|728644 (X85136)
MotB [Rhodobacter sphaeroides]
Length = 332
Score = 107 bits (264), Expect = 1e-22
Identities = 28/156 (17%), Positives = 52/156 (32%), Gaps = 14/156 (8%)
Query: 21 AAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRT-----PLATAVTGGDR 75
+W +AD T +MAFF+++ + ++A R + A +G
Sbjct: 29 PGAPAWLATFADIATNLMAFFVLILGFAKFDEPSFSKMAGAMRETFGFHSIRDATSGNTM 88
Query: 76 ISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRAL 135
I G + + + ++ E L+K D +L ++R+
Sbjct: 89 IDFGLPTADPDGAQPDEKSDTGGSEDGGDAAERVAE--ALKKALED-GKL-----QVRSD 140
Query: 136 RPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPY 171
+ I+L E R Q R + T P
Sbjct: 141 EGEVVIELSGEDGRQQAQSL-ARALAETAGLGPLPE 175
gi|2062640 (U87559) CadF precursor [Campylobacter coli]
Length = 326
Score = 73.3 bits (177), Expect = 2e-12
Identities = 28/104 (26%), Positives = 46/104 (43%), Gaps = 9/104 (8%)
Query: 161 FRTGSADVEPYMRDILRAIAPVLNGIPN-RISLSGHTDDFPYASGEKGYSNWELSADRAN 219
F D+ P + ++ IA +L+ L GHTD+ G + Y N +LS RA
Sbjct: 223 FGFDKVDINPAFEEKIKEIAQLLDENARYDTILEGHTDNI----GSRAY-NQKLSERRAE 277
Query: 220 ASRRELMVGGLDSGKVLRVVGMAATMRL--SDRGPDDAVNRRIS 261
+ +EL G+D ++ + VG ++ A NRR+
Sbjct: 278 SVAKELEKFGVDKDRI-QTVGYGQDKPRSRNETKEGRADNRRVD 320
gi|2641145 (AF030977) putative outer membrane porin [Vibrio cholerae]
Length = 321
Score = 72.9 bits (176), Expect = 2e-12
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 157 NRPMFRTGSADVEPYMRDILRAIAPVLNGIPN-RISLSGHTDDFPYASGEKGYSNWELSA 215
+ F T SA+++P L I LN P ++ + GHTD S N +LS
Sbjct: 208 DSSTFATASAELKPATVQKLDKIVGYLNQYPQAKVEVVGHTD-----STGSEAYNQKLSE 262
Query: 216 DRANASRRELMVGGLDSGKVLRVVGMAATMR--LSDRGPDDAVNRRISLLV 264
RA A + L G+D+ ++ G+ + + NRR+ L++
Sbjct: 263 RRAQAVAKALEAQGIDASRI-SAKGLGESSPIASNATAEGREKNRRVELVI 312
sp|P37665|YIAD_ECOLI HYPOTHETICAL 22.2 KD LIPOPROTEIN IN BISC-CSPA INTERGENIC REGION
PRECURSOR (O219) >gi|1073493|pir||S47773 hypothetical
protein o219 - Escherichia coli >gi|466690 (U00039) No
definition line found [Escherichia coli] >gi|1789974
(AE000432) hypothetical 22.2 kD lipoprotein in bisc-cspa
intergenic regi [Escherichia coli]
Length = 219
Score = 71.3 bits (172), Expect = 7e-12
Identities = 32/140 (22%), Positives = 61/140 (42%), Gaps = 8/140 (5%)
Query: 128 SDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIP 187
+ +R + + + G I I++ N F + SA ++P + L +A VL P
Sbjct: 84 QEANVRDKMRGTGVSVTRSGDNI-ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYP 142
Query: 188 N-RISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGK-VLRVVGMAATM 245
+++ G+TD S N LS RA++ L+ G+D+ + + +G A +
Sbjct: 143 KTAVNVIGYTD-----STGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLGPANPI 197
Query: 246 RLSDRGPDDAVNRRISLLVL 265
+ A NRR+ + +
Sbjct: 198 ASNSTAEGKAQNRRVEITLS 217
sp|P13794|PORF_PSEAE OUTER MEMBRANE PORIN F PRECURSOR >gi|481695|pir||S39156 porin F
precursor - Pseudomonas aeruginosa >gi|151409 (M94078)
oprF [Pseudomonas aeruginosa] >gi|151508 (M18975) porin
protein F precursor [Pseudomonas aeruginosa]
Length = 350
Score = 70.1 bits (169), Expect = 2e-11
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 152 IIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNR-ISLSGHTDDFPYASGEKGYSN 210
++ Q F + V+ ++ +A + P+ ++ GHTD + N
Sbjct: 235 VVRVQLDVKFDFDKSKVKENSYADIKNLADFMKQYPSTSTTVEGHTDSV---GTDAY--N 289
Query: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDR--GPDDAVNRRIS 261
+LS RANA R L+ G + VG + ++D A+NRR+
Sbjct: 290 QKLSERRANAVRDVLVNEYGVEGGRVNAVGYGESRPVADNATAEGRAINRRVE 342
sp|Q05146|OMPA_BORAV OUTER MEMBRANE PROTEIN A PRECURSOR >gi|348516|pir||A45275 21K outer
membrane protein OmpA - Bordetella avium >gi|144052
(M96550) outer membrane protein A [Bordetella avium]
Length = 194
Score = 69.8 bits (168), Expect = 2e-11
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 156 QNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLS-GHTDDFPYASGEKGYSNWELS 214
F + ++P R +L +A I ++ G+TD E N +LS
Sbjct: 84 NADTFFDFDKSTLKPEGRQLLDQVAQQARAIDLETIIAVGNTDSI---GTEAY--NMKLS 138
Query: 215 ADRANASRRELMVGGLDSGKVL-RVVGMAATMRLSDRGPDDAVNRRISLLV 264
RA + + L+ G+D ++ G + + A NRR+ + +
Sbjct: 139 ERRAASVKAYLVSKGIDPNRIYTEGKGKLNPIASNKTAEGRARNRRVEIEI 189
gi|347153 (L21197) protein F [Pseudomonas fluorescens]
Length = 317
Score = 69.0 bits (166), Expect = 4e-11
Identities = 28/114 (24%), Positives = 53/114 (45%), Gaps = 9/114 (7%)
Query: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPN-RISLSGHTDDFPYASGEKGYS 209
Q++ + F + V+P ++ +A + P+ + ++GHTD G Y
Sbjct: 208 QVVRVELDVKFDFDKSVVKPNSYGDVKNLADFMAQYPDTNVEVAGHTDSV----GPDAY- 262
Query: 210 NWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRG--PDDAVNRRIS 261
N +LS RA+A ++ L+ G+ ++ V G + ++D AVNRR+
Sbjct: 263 NQKLSQRRADAVKQVLVKDGVAPSRITSV-GYGESRPVADNATEAGRAVNRRVE 315
gi|347163 (L21202) protein F [Pseudomonas fluorescens]
Length = 317
Score = 69.0 bits (166), Expect = 4e-11
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIP-NRISLSGHTDDFPYASGEKGYS 209
Q++ + F + V+P ++ +A + P + ++GHTD G Y
Sbjct: 208 QVVRVELDVKFDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV----GPDAY- 262
Query: 210 NWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRG--PDDAVNRRIS 261
N +LS RA+A ++ L+ G+ +V V G + ++D AVNRR+
Sbjct: 263 NQKLSQRRADAVKQVLVKDGVAPSRVTAV-GYGESRPVADNATEAGRAVNRRVE 315
pir||S20494 root adhesin - Pseudomonas fluorescens
Length = 326
Score = 68.2 bits (164), Expect = 6e-11
Identities = 28/117 (23%), Positives = 52/117 (43%), Gaps = 9/117 (7%)
Query: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIP-NRISLSGHTDDFPYASGEKGYS 209
Q++ + F + V+P ++ +A + P + ++GHTD G Y
Sbjct: 211 QVVRVELDVKFDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSI----GPDAY- 265
Query: 210 NWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGP--DDAVNRRISLLV 264
N +LS RA+ ++ L+ G+ ++ V G + ++D AVNRR+ V
Sbjct: 266 NQKLSQRRADRVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASV 321
sp|P37726|PORF_PSEFL OUTER MEMBRANE PORIN F PRECURSOR (ROOT ADHESIN) >gi|312233 (X62168)
oprF gene product [Pseudomonas fluorescens]
Length = 326
Score = 68.2 bits (164), Expect = 6e-11
Identities = 28/117 (23%), Positives = 52/117 (43%), Gaps = 9/117 (7%)
Query: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIP-NRISLSGHTDDFPYASGEKGYS 209
Q++ + F + V+P ++ +A + P + ++GHTD G Y
Sbjct: 211 QVVRVELDVKFDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSI----GPDAY- 265
Query: 210 NWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGP--DDAVNRRISLLV 264
N +LS RA+ ++ L+ G+ ++ V G + ++D AVNRR+ V
Sbjct: 266 NQKLSQRRADRVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVEASV 321
sp|Q10557|YZ27_MYCTU HYPOTHETICAL 33.6 KD PROTEIN CY31.27 >gi|1314039|gnl|PID|e241793
(Z73101) ompA [Mycobacterium tuberculosis]
Length = 326
Score = 67.8 bits (163), Expect = 8e-11
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 159 PMFRTGSADVEPYMRDILRAIAPVLNGIPN-RISLSGHTDDFPYASGEKGYSNWELSADR 217
F A + P +IL +A L P+ R++++G+TD+ N LSA R
Sbjct: 223 IAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDN-----TGSEGINIPLSAQR 277
Query: 218 ANASRRELMVGGLDSGKVLRV-VGMAATMRLSDRGPDDAVNRRISLLV 264
A L+ G+ + V +G + + A NRR+ ++V
Sbjct: 278 AKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV 325
gi|347159 (L21200) protein F [Pseudomonas fluorescens]
Length = 317
Score = 67.4 bits (162), Expect = 1e-10
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIP-NRISLSGHTDDFPYASGEKGYS 209
Q++ + F + V+P ++ +A + P + ++GHTD G Y
Sbjct: 208 QVVRVELDVKFDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSI----GPDAY- 262
Query: 210 NWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRG--PDDAVNRRIS 261
N +LS RA+A ++ L+ G+ ++ V G + ++D AVNRR+
Sbjct: 263 NQKLSQRRADAVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVE 315
gi|641920 (U19743) protein F precursor [Pseudomonas fluorescens]
Length = 317
Score = 67.4 bits (162), Expect = 1e-10
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIP-NRISLSGHTDDFPYASGEKGYS 209
Q++ + F + V+P ++ +A + P + ++GHTD G Y
Sbjct: 208 QVVRVELDVKFDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV----GPDAY- 262
Query: 210 NWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRG--PDDAVNRRIS 261
N +LS RA+A ++ L+ G+ ++ V G + ++D AVNRR+
Sbjct: 263 NQKLSQRRADAVKQVLVKDGVAPSRITAV-GYGESRPVADNATEAGRAVNRRVE 315
gi|2688065 (AE001128) outer membrane protein (tpn50) [Borrelia burgdorferi]
Length = 389
Score = 67.0 bits (161), Expect = 1e-10
Identities = 33/147 (22%), Positives = 53/147 (35%), Gaps = 9/147 (6%)
Query: 123 DQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPV 182
D LIE++ + +K V++ + I+ F S + + IA +
Sbjct: 250 DNLIETEVENYIREKKIKAIEVEKNNKG--INLSFDIEFYPNSFQILQKEYKKIDLIAKL 307
Query: 183 LNGIP-NRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGM 241
L N I + GHT+ F ELS RA A L+ + + G
Sbjct: 308 LEKFKKNNILIEGHTEQF-----GLEEEMHELSEKRARAIGNYLIKMKVKDKDQILFKGW 362
Query: 242 AATMRLSD-RGPDDAVNRRISLLVLNK 267
+ P A NRR+ + +LN
Sbjct: 363 GSQKPKYPKSSPLKAKNRRVEITILNN 389
gi|347155 (L21198) protein F [Pseudomonas fluorescens]
Length = 317
Score = 66.6 bits (160), Expect = 2e-10
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRI-SLSGHTDDFPYASGEKGYS 209
Q++ + F + V+P ++ +A + P + GHTD G Y
Sbjct: 208 QVVRVELDVKFDFDKSVVKPNSYGDVKNLADFMKQYPQTTTVVEGHTDSV----GPDAY- 262
Query: 210 NWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRG--PDDAVNRRIS 261
N +LS RA+A ++ L+ G+ +V V G + ++D A+NRR+
Sbjct: 263 NQKLSQRRADAVKQVLVKDGIAPNRVSSV-GYGKSRPVADNATEAGRAINRRVE 315
gi|347161 (L21201) protein F [Pseudomonas tolaasii]
Length = 317
Score = 66.6 bits (160), Expect = 2e-10
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRI-SLSGHTDDFPYASGEKGYS 209
Q++ + F + V+P ++ +A + P + GHTD G Y
Sbjct: 208 QVVRVELDVKFDFDKSVVKPNSYGDVKNLADFMKQYPQTTTVVEGHTDSV----GPDAY- 262
Query: 210 NWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRG--PDDAVNRRIS 261
N +LS RA+A ++ L+ G+ +V V G + ++D A+NRR+
Sbjct: 263 NQKLSQRRADAVKQVLVKDGIAPNRVSSV-GYGKSRPVADNATEAGRAINRRVE 315
pir||S61867 antigen tpp57 - Treponema pallidum >gi|532658 (L28427) antigen
[Treponema pallidum]
Length = 416
Score = 66.3 bits (159), Expect = 2e-10
Identities = 30/127 (23%), Positives = 49/127 (37%), Gaps = 9/127 (7%)
Query: 144 VQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNR-ISLSGHTDDFPYA 202
V+E I F SA + P + LR IA +L P+R + +SGH +
Sbjct: 296 VRETEEGVTISI-ENVQFDADSASLAPSEYEKLRKIAELLRAFPDRELLVSGHAERR--- 351
Query: 203 SGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATM--RLSDRGPDDAVNRRI 260
+S +RA+ R L G+ + G A +D NRR+
Sbjct: 352 --GSVQDQQRISEERADVVARYLQELGVVDAAHVYTRGCGAQQSIAPNDSEDGRRKNRRV 409
Query: 261 SLLVLNK 267
+ +++K
Sbjct: 410 EITIISK 416
pir||S39866 outer membrane protein CD - Moraxella catarrhalis >gi|149757
(L10755) outer membrane protein CD [Moraxella
catarrhalis]
Length = 453
Score = 65.9 bits (158), Expect = 3e-10
Identities = 25/110 (22%), Positives = 43/110 (38%), Gaps = 5/110 (4%)
Query: 158 RPMFRTGSADVEPYMRDILRAIAPVLNGIPNRIS-LSGHTDDFPYASGEKGYSNWELSAD 216
R F + ++P R+ + +A + PN + + GH S + N LS
Sbjct: 329 RVFFDYDKSIIKPQYREEVAKVAAQMREFPNATATIEGHASRDSARSSARY--NQRLSEA 386
Query: 217 RANASRRELMVGGLDSGKVLRVVGMAATMRLSDR--GPDDAVNRRISLLV 264
RANA + L + L VG ++ A+NRR+ ++
Sbjct: 387 RANAVKSMLSNEFGIAPNRLNAVGYGFDRPIAPNTTAEGKAMNRRVEAVI 436
gi|458015 (U02628) TpN50 precursor [Treponema pallidum]
Length = 417
Score = 65.5 bits (157), Expect = 4e-10
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 9/127 (7%)
Query: 144 VQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNR-ISLSGHTDDFPYA 202
V+E I F SA + P + LR IA +L P+R + +SGH A
Sbjct: 297 VRETEEGVTISI-ENVQFDADSASLAPSEYEKLRKIAELLRAFPDRELLVSGHA-----A 350
Query: 203 SGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATM--RLSDRGPDDAVNRRI 260
+S +RA+ R L G+ + G A +D NRR+
Sbjct: 351 RRGSVQDQQRISEERADVVARYLQELGVVDAAHVYTRGCGAQQSIAPNDSEDGRRKNRRV 410
Query: 261 SLLVLNK 267
+ +++K
Sbjct: 411 EITIISK 417
sp|P38369|TP50_TREPA OUTER MEMBRANE PROTEIN TPN50 PRECURSOR >gi|3322558 (AE001209) outer
membrane protein (tpn50) [Treponema pallidum]
Length = 417
Score = 65.5 bits (157), Expect = 4e-10
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 9/127 (7%)
Query: 144 VQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNR-ISLSGHTDDFPYA 202
V+E I F SA + P + LR IA +L P+R + +SGH A
Sbjct: 297 VRETEEGVTISI-ENVQFDADSASLAPSEYEKLRKIAELLRAFPDRELLVSGHA-----A 350
Query: 203 SGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATM--RLSDRGPDDAVNRRI 260
+S +RA+ R L G+ + G A +D NRR+
Sbjct: 351 RRGSVQDQQRISEERADVVARYLQELGVVDAAHVYTRGCGAQQSIAPNDSEDGRRKNRRV 410
Query: 261 SLLVLNK 267
+ +++K
Sbjct: 411 EITIISK 417
gi|3493603 (AF067083) outer membrane protein homolog [Vitreoscilla sp.]
Length = 217
Score = 65.5 bits (157), Expect = 4e-10
Identities = 32/137 (23%), Positives = 58/137 (41%), Gaps = 10/137 (7%)
Query: 131 KLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNR- 189
+LR + ++++ + G I+ + F TGS + L +++ VL +
Sbjct: 83 QLRQSLANTQVEVNRVGDEIR-LVMPESITFATGSYQLNSSASTSLNSVSSVLAQYTDTT 141
Query: 190 ISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSD 249
I++ GHTD S N LS +RA+A L+ + S ++ V G ++
Sbjct: 142 INIVGHTD-----STGSDAINEPLSRNRASAVANYLVSRNVASNRITTV-GAGCRQPVAS 195
Query: 250 RGP--DDAVNRRISLLV 264
A NRR+ + V
Sbjct: 196 NNTVAGRAENRRVEITV 212
sp|P22263|PORF_PSESY OUTER MEMBRANE PORIN F PRECURSOR >gi|95008|pir||A39139 outer
membrane protein OprF precursor - Pseudomonas syringae
>gi|151407 (M55408) oprF [Pseudomonas syringae]
Length = 344
Score = 63.5 bits (152), Expect = 2e-09
Identities = 27/104 (25%), Positives = 44/104 (41%), Gaps = 8/104 (7%)
Query: 161 FRTGSADVEPYMRDILRAIAPVLNGIPNRIS-LSGHTDDFPYASGEKGYSNWELSADRAN 219
F + V+P ++ +A + P + + GHTD G Y N +LS RAN
Sbjct: 238 FDFDKSVVKPNSYGDIKNLADFMQQYPQTTTTVEGHTDSV----GPDAY-NQKLSERRAN 292
Query: 220 ASRRELMVGGLDSGKVLRVVGMAATMRLSDRG--PDDAVNRRIS 261
A ++ L+ + VG + ++D AVNRR+
Sbjct: 293 AVKQVLVNQYGVGASRVNSVGYGESKPVADNATEAGRAVNRRVE 336
sp|P43036|PAL_PSEPU PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN PRECURSOR
>gi|1073038|pir||S52308 pal1 protein - Pseudomonas
putida >gi|663068 (X74218) PAL [Pseudomonas putida]
Length = 166
Score = 62.7 bits (150), Expect = 3e-09
Identities = 30/104 (28%), Positives = 46/104 (43%), Gaps = 8/104 (7%)
Query: 161 FRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANA 220
F S+D++P L A L NR+ L G+TD+ G + Y N L RA A
Sbjct: 67 FEYDSSDLKPEAMRALDVHAKDLKANGNRVVLEGNTDER----GTREY-NMALGERRAKA 121
Query: 221 SRRELMVGGLDSGKVLRVVGMAATMRLS-DRGPDD-AVNRRISL 262
+R L++ G+ + L +V ++ A NRR+ L
Sbjct: 122 VQRYLVLQGVSPAQ-LELVSYGEERPVATGNDEQSWAQNRRVEL 164
pir||S58217 outer membrane protein - Pseudomonas aeruginosa
Length = 167
Score = 60.0 bits (143), Expect = 2e-08
Identities = 31/104 (29%), Positives = 46/104 (43%), Gaps = 9/104 (8%)
Query: 161 FRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANA 220
F S+D++P L A L G R+ L GHTD+ G + Y N L RA A
Sbjct: 69 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDER----GTREY-NMALGERRAKA 123
Query: 221 SRRELMVGGLDSGKVLRVVGMAATMRLS--DRGPDDAVNRRISL 262
+R L++ G+ + L +V ++ A NRR+ L
Sbjct: 124 VQRYLVLQGV--SRQLELVSYGKERPVATGHDEQSWAQNRRVEL 165
gnl|PID|e327826 (Z50191) outer membrane protein [Pseudomonas aeruginosa]
Length = 168
Score = 59.6 bits (142), Expect = 2e-08
Identities = 31/104 (29%), Positives = 45/104 (42%), Gaps = 8/104 (7%)
Query: 161 FRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANA 220
F S+D++P L A L G R+ L GHTD+ G + Y N L RA A
Sbjct: 69 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDER----GTREY-NMALGERRAKA 123
Query: 221 SRRELMVGGLDSGKVLRVVGMAATMRLS--DRGPDDAVNRRISL 262
+R L++ G+ L +V ++ A NRR+ L
Sbjct: 124 VQRYLVLQGVSPA-TLELVSYGKERPVATGHDEQSWAQNRRVEL 166
gi|1000844 (L47642) 18.5 kDa protein [Bartonella bacilliformis]
Length = 171
Score = 55.7 bits (132), Expect = 3e-07
Identities = 32/147 (21%), Positives = 53/147 (35%), Gaps = 10/147 (6%)
Query: 143 LVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNR-ISLSGHTDDFPY 201
+ I +R F S+ +E + IL A L P+ I + GH DD
Sbjct: 17 ATPGSEQDFAITVGDRVFFSLDSSVIEADAQRILVRQAEWLLLYPHHTIMIEGHADDR-- 74
Query: 202 ASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS--DRGPDDAVNRR 259
G + Y N L RA A R L+ G+ ++ + ++ D NRR
Sbjct: 75 --GTREY-NLALGQRRAIAVRDYLVSLGVSPQRMKTMS-YGKERPVAVCDDISCWNQNRR 130
Query: 260 ISLLVLNKQAEQAILHENAESQNEPVS 286
+ + + A + + + E S
Sbjct: 131 VVISI-TSGAVRKGFCQKSIFPIEKES 156
gi|3322920 (AE001237) conserved hypothetical protein [Treponema pallidum]
Length = 476
Score = 55.7 bits (132), Expect = 3e-07
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 161 FRTGSADVEPYMRDILRAIAPVLNGIP--NRISLSGHTDDFPYASGEKGYSNWELSADRA 218
F S ++ +D + IA L + R + GHT D E LS RA
Sbjct: 372 FVANSPEILASEKDRVDVIATALKKMGPYTRFLIEGHTADLHRPQEEA-----ALSVARA 426
Query: 219 NASRRELMVGGLDSGKVLRVVGMAATMRL--SDRGPDDAVNRRISLLVLN 266
+EL G++ ++ G AT + SD + A NRR+ + +L
Sbjct: 427 QRMAQELSRRGIEMTRITTA-GHGATKPIAPSDTHANKAKNRRVEITILR 475
sp|P24755|OMPA_SEROD OUTER MEMBRANE PROTEIN A (OUTER MEMBRANE PROTEIN II) >gi|152839
(M63357) outer membrane protein II [Serratia odorifera]
Length = 243
Score = 54.2 bits (128), Expect = 1e-06
Identities = 23/123 (18%), Positives = 48/123 (38%), Gaps = 21/123 (17%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F + + ++P + L + L+ + + G+TD K +N
Sbjct: 122 LKSDVLFNSAKSSLKPEGQQALDQLYTQLSSMDPKDGSVVVLGYTDPV-----GKDAANQ 176
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDR---GPDDAV---------NRR 259
+LS RA + L+ G+ + K + GM +++D A NRR
Sbjct: 177 KLSEARARSVVDYLVSKGIPADK-ISARGMGEADQVTDSCGYKNGRATKAQIECLAPNRR 235
Query: 260 ISL 262
+ +
Sbjct: 236 VEI 238
pir||S07952 hypothetical protein, 16K (rplS 3' region) - Escherichia coli
>gi|43146 (X01818) unidentified reading frame (16K
polypeptide) (aa 1-127) [Escherichia coli]
Length = 127
Score = 53.0 bits (125), Expect = 2e-06
Identities = 23/116 (19%), Positives = 41/116 (34%), Gaps = 8/116 (6%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNR-ISLSGHTDDFPYASGEKGYSNWEL 213
+ +F + P + ++ +A L + GHTD++ S N L
Sbjct: 17 LSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSY-----NEGL 71
Query: 214 SADRANASRRELMVGGLDSGKVLRVVGMAATMR--LSDRGPDDAVNRRISLLVLNK 267
S RAN +GG L G+ + A NRR+++++
Sbjct: 72 SLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 127
sp|P07021|YFIB_ECOLI PUTATIVE 15.3 KD LIPOPROTEIN IN AROF-RPLS INTERGENIC REGION
PRECURSOR >gi|1788957 (AE000346) hypothetical 17.2 kD
protein in rplS 5'region [Escherichia coli]
>gi|1800010|gnl|PID|d1017221 (D90888) similar to
[SwissProt Accession Number P07021] [Escherichia coli]
Length = 160
Score = 53.0 bits (125), Expect = 2e-06
Identities = 23/116 (19%), Positives = 41/116 (34%), Gaps = 8/116 (6%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNR-ISLSGHTDDFPYASGEKGYSNWEL 213
+ +F + P + ++ +A L + GHTD++ S N L
Sbjct: 50 LSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSY-----NEGL 104
Query: 214 SADRANASRRELMVGGLDSGKVLRVVGMAATMR--LSDRGPDDAVNRRISLLVLNK 267
S RAN +GG L G+ + A NRR+++++
Sbjct: 105 SLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
sp|P46233|MOTY_VIBPA SODIUM-TYPE FLAGELLAR PROTEIN MOTY PRECURSOR >gi|497129 (U06949)
MotY [Vibrio parahaemolyticus]
Length = 293
Score = 51.5 bits (121), Expect = 7e-06
Identities = 22/113 (19%), Positives = 40/113 (34%), Gaps = 12/113 (10%)
Query: 161 FRTGSADVEPYMRDILRAIAPVL---NGIPNRISLSGHTDDFPYASGEKGYSNWELSADR 217
+ + + L IA + I + ++ +TD S + LS R
Sbjct: 187 YERQGDQLTKASKKRLAQIADYVRHNQDIDL-VLVATYTDSTDGKSESQS-----LSERR 240
Query: 218 ANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGP--DDAVNRRISLLVLNKQ 268
A + R GL ++ +V G ++D G NRR+ + + Q
Sbjct: 241 AESLRTYFESLGLPEDRI-QVQGYGKRRPIADNGTPIGKDKNRRVVISLGRTQ 292
gnl|PID|d1012989 (D84310) component of sodium-driven polar flagellar motor [Vibrio
alginolyticus]
Length = 293
Score = 51.5 bits (121), Expect = 7e-06
Identities = 22/113 (19%), Positives = 40/113 (34%), Gaps = 12/113 (10%)
Query: 161 FRTGSADVEPYMRDILRAIAPVL---NGIPNRISLSGHTDDFPYASGEKGYSNWELSADR 217
+ + + L IA + I + ++ +TD S + LS R
Sbjct: 187 YERQGDQLTKASKKRLSQIADYIRHNQDIDL-VLVATYTDSTDGKSASQS-----LSERR 240
Query: 218 ANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGP--DDAVNRRISLLVLNKQ 268
A + R GL ++ +V G ++D G NRR+ + + Q
Sbjct: 241 AESLRDYFQSLGLPEDRI-QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 292
sp|P02934|OMPA_ECOLI OUTER MEMBRANE PROTEIN A PRECURSOR (OUTER MEMBRANE PROTEIN II*)
>gi|72585|pir||MMECA outer membrane protein A precursor
- Escherichia coli >gi|42161 (V00307) ompA protein
[Escherichia coli] >gi|146981 (J01654) outer membrane
protein II [Escherichia coli]
>gi|1651465|gnl|PID|d1015338 (D90733) Outer membrane
protein A precursor [Escherichia coli]
>gi|1651469|gnl|PID|d1015341 (D90734) Outer membrane
protein A precursor [Escherichia coli] >gi|1787191
(AE000198) outer membrane protein A [Escherichia coli]
Length = 346
Score = 50.7 bits (119), Expect = 1e-05
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + + G+TD + N
Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI---GSDAY--NQ 271
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
LS RA + L+ G+ + K + GM + ++ D A +RR+
Sbjct: 272 GLSERRAQSVVDYLISKGIPADK-ISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRV 330
Query: 261 SL 262
+
Sbjct: 331 EI 332
pir||I84531 outer membrane protein II - Escherichia fergusonii (ATCC 35469)
(fragment) >gi|146983 (M63351) outer membrane protein II
[Escherichia fergusonii]
Length = 243
Score = 50.7 bits (119), Expect = 1e-05
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + + G+TD + N
Sbjct: 123 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI---GSDAY--NQ 177
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
LS RA + L+ G+ + K + GM + ++ D A +RR+
Sbjct: 178 GLSERRAQSVVDYLISKGIPADK-ISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRV 236
Query: 261 SL 262
+
Sbjct: 237 EI 238
sp|P24747|OMPA_ESCFE OUTER MEMBRANE PROTEIN A (OUTER MEMBRANE PROTEIN II)
>gi|2147836|pir||I62392 outer membrane protein II -
Escherichia fergusonii (ATCC 35472) (fragment)
>gi|2147837|pir||I62388 outer membrane protein II -
Escherichia fergusonii (fragment) >gi|146991 (M63352)
outer membrane protein II [Escherichia fergusonii]
>gi|146999 (M63353) outer membrane protein II
[Escherichia fergusonii]
Length = 243
Score = 50.7 bits (119), Expect = 1e-05
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + + G+TD + N
Sbjct: 123 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI---GSDAY--NQ 177
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
LS RA + L+ G+ + K + GM + ++ D A +RR+
Sbjct: 178 GLSERRAQSVVDYLISKGIPADK-ISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRV 236
Query: 261 SL 262
+
Sbjct: 237 EI 238
sp|P02935|OMPA_SHIDY OUTER MEMBRANE PROTEIN A PRECURSOR (OUTER MEMBRANE PROTEIN II)
>gi|72586|pir||MMEBAD outer membrane protein A precursor
- Shigella dysenteriae >gi|46945 (V01344) ompA;
pid:g46945 [Shigella dysenteriae]
Length = 351
Score = 50.7 bits (119), Expect = 1e-05
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + + G+TD + N
Sbjct: 222 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI---GSDAY--NQ 276
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
LS RA + L+ G+ + K + GM + ++ D A +RR+
Sbjct: 277 GLSERRAQSVVDYLISKGIPADK-ISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRV 335
Query: 261 SL 262
+
Sbjct: 336 EI 337
gi|940548 (Z25775) Outer membrane or porin protein [Leptothrix discophora]
Length = 84
Score = 50.7 bits (119), Expect = 1e-05
Identities = 19/74 (25%), Positives = 30/74 (39%), Gaps = 6/74 (8%)
Query: 190 ISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVL-RVVGMAATMRLS 248
I GHTD S N +LS RA A ++ L+ G++ +V G + +
Sbjct: 6 IIAVGHTD-----SDGSDALNDKLSVSRAEAVKKYLVSKGIEQNRVYTEAKGEKQPVADN 60
Query: 249 DRGPDDAVNRRISL 262
NRR+ +
Sbjct: 61 STKEGKQKNRRVEI 74
sp|P24016|OMPA_CITFR OUTER MEMBRANE PROTEIN A (OUTER MEMBRANE PROTEIN II)
>gi|2119836|pir||I40703 outer membrane protein II -
Citrobacter freundii (fragment) >gi|144442 (M63354)
outer membrane protein II [Citrobacter freundii]
Length = 238
Score = 49.5 bits (116), Expect = 3e-05
Identities = 23/122 (18%), Positives = 44/122 (35%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + + G TD + N
Sbjct: 118 LKSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTDRI---GSDAY--NQ 172
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
LS RA + L+ G+ S K + GM + ++ D A +RR+
Sbjct: 173 GLSEKRAQSVVDYLISKGIPSDK-ISARGMGESNPVTGNTCDNVKARAALIDCLAPDRRV 231
Query: 261 SL 262
+
Sbjct: 232 EI 233
pir||I40346 omp16 protein - Brucella abortus >gi|538293 (L27996) Omp16
[Brucella abortus 1]
Length = 168
Score = 49.5 bits (116), Expect = 3e-05
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 157 NRPMFRTGSADVEPYMRDILRAIAPVLNGIP-NRISLSGHTDDFPYASGEKGYSNWELSA 215
+R F S+ + + L A L P I++ GH D+ G + Y N L
Sbjct: 59 DRIFFDLDSSLIRADAQQTLSKQAQWLQRYPQYSITIEGHADER----GTREY-NLALGQ 113
Query: 216 DRANASRRELMVGGLDSGKVLRVVGMAATMRLS--DRGPDDAVNRRISLLV 264
RA A+R L G+ + + +R + ++ D + NRR ++
Sbjct: 114 RRAAATRDFLASRGVPTNR-MRTISYGNERPVAVCDADTCWSQNRRAVTVL 163
gi|145528 (M34669) MotB protein [Escherichia coli]
Length = 33
Score = 49.5 bits (116), Expect = 3e-05
Identities = 33/33 (100%), Positives = 33/33 (100%)
Query: 276 ENAESQNEPVSALEKPEVAPQVSVPTMPSAEPR 308
ENAESQNEPVSALEKPEVAPQVSVPTMPSAEPR
Sbjct: 1 ENAESQNEPVSALEKPEVAPQVSVPTMPSAEPR 33
sp|P24754|OMPA_ESCHE OUTER MEMBRANE PROTEIN A (OUTER MEMBRANE PROTEIN II)
>gi|2147838|pir||I62390 outer membrane protein II -
Escherichia hermannii (ATCC 33652) (fragment)
>gi|2147839|pir||I62386 outer membrane protein II -
Escherichia hermannii (fragment) >gi|146987 (M63346)
outer membrane protein II [Escherichia hermannii]
>gi|146995 (M63347) outer membrane protein II
[Escherichia hermannii]
Length = 243
Score = 49.1 bits (115), Expect = 3e-05
Identities = 23/122 (18%), Positives = 44/122 (35%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + + G TD + N
Sbjct: 123 LKSDVLFNFNKATLKPEGQQALDQMYTQLSNLDPKDGSVVVLGFTDRI---GSDAY--NQ 177
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
LS RA + L+ G+ S K + GM + ++ D A +RR+
Sbjct: 178 GLSEKRAQSVVDYLISKGIPSDK-ISARGMGESNPVTGNTCDNVKPRAALIDCLAPDRRV 236
Query: 261 SL 262
+
Sbjct: 237 EI 238
sp|P26493|PAL_LEGPN PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN PRECURSOR (19 KD SURFACE
ANTIGEN) (PPL) >gi|280043|pir||A60337 outer membrane
protein pplA, peptidoglycan-associated, precursor -
Legionella pneumophila >gi|44129 (X60543) lipoprotein
antigen [Legionella pneumophila]
Length = 176
Score = 48.7 bits (114), Expect = 4e-05
Identities = 26/107 (24%), Positives = 43/107 (39%), Gaps = 9/107 (8%)
Query: 160 MFRTGSADVEPYMRDILRAIAPVLNGIPN-RISLSGHTDDFPYASGEKGYSNWELSADRA 218
+F + + + A A L P R+ ++GHTD+ G + Y N L RA
Sbjct: 71 LFAYDDSTLASKYLPSVNAQAEYLKTHPGARVMIAGHTDER----GSREY-NVALGERRA 125
Query: 219 NASRRELMVGGLDSGKVLRVVGMAATMRLS--DRGPDDAVNRRISLL 263
+ L + G+ S + +RVV + A NRR+ +
Sbjct: 126 DTVAEILRMAGV-SRQQIRVVSYGKERPANYGHDEASHAQNRRVEFI 171
sp|P07050|OMP3_NEIGO OUTER MEMBRANE PROTEIN P.III PRECURSOR (GONOCOCCAL PROTEIN III)
(PIII) >gi|78109|pir||A27894 outer membrane protein PIII
precursor - Neisseria gonorrhoeae >gi|44890 (X05105)
PIII (AA 1-236) [Neisseria gonorrhoeae]
Length = 236
Score = 48.7 bits (114), Expect = 4e-05
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 153 IDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPN--RISLSGHTDDFPYASGEKGYSN 210
I + +F + +D L+ +A L+ N + + GHTD + EK N
Sbjct: 91 ISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLS-RTNVQSVRVEGHTD---FMGSEKY--N 144
Query: 211 WELSADRANASRRELMVGGLDSGKVLRVVGMAATM 245
LS RA L+ G+ + VG+ +
Sbjct: 145 QALSERRAYVVANNLVSNGV-PASRISAVGLGESQ 178
gi|347157 (L21199) protein F [Pseudomonas fluorescens]
Length = 296
Score = 47.9 bits (112), Expect = 8e-05
Identities = 24/93 (25%), Positives = 42/93 (44%), Gaps = 7/93 (7%)
Query: 151 QIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIP-NRISLSGHTDDFPYASGEKGYS 209
Q++ + F A V+P ++ +A + P + ++GHTD G Y
Sbjct: 208 QVVRVELDVKFDFDKAVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSV----GPDAY- 262
Query: 210 NWELSADRANASRRELMVGGLDSGKVLRVVGMA 242
N +LS RA+A ++ L+ G+ +V V G
Sbjct: 263 NQKLSQRRADAVKQVLVKDGVAPSRVTAV-GYG 294
pir||I62389 outer membrane protein II - Escherichia vulneris (ATCC 33821)
(fragment) >gi|146993 (M63349) outer membrane protein II
[Escherichia vulneris]
Length = 244
Score = 47.9 bits (112), Expect = 8e-05
Identities = 23/122 (18%), Positives = 44/122 (35%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + + G TD + N
Sbjct: 124 LKSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTDRI---GSDAY--NQ 178
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPD-----------DAVNRRI 260
LS RA + L+ G+ S K + GM + ++ D A +RR+
Sbjct: 179 GLSEKRAQSVVDYLISKGIPSNK-ISARGMGESNPVTGNTCDNVKARPALIDCLAPDRRV 237
Query: 261 SL 262
+
Sbjct: 238 EI 239
pir||I62393 outer membrane protein II - Escherichia vulneris (ATCC 33822)
(fragment) >gi|147001 (M63350) outer membrane protein II
[Escherichia vulneris]
Length = 244
Score = 47.9 bits (112), Expect = 8e-05
Identities = 23/122 (18%), Positives = 44/122 (35%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + + G TD + N
Sbjct: 124 LKSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTDRI---GSDAY--NQ 178
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPD-----------DAVNRRI 260
LS RA + L+ G+ S K + GM + ++ D A +RR+
Sbjct: 179 GLSEKRAQSVVDYLISKGIPSNK-ISARGMGESNPVTGNTCDNVKARPALIDCLAPDRRV 237
Query: 261 SL 262
+
Sbjct: 238 EI 239
sp|P02936|OMPA_SALTY OUTER MEMBRANE PROTEIN A PRECURSOR (OUTER MEMBRANE PROTEIN 33K)
(OUTER MEMBRANE MAJOR HEAT-MODIFIABLE PROTEIN)
>gi|72587|pir||MMEBAT outer membrane protein A precursor
- Salmonella typhimurium >gi|758341 (X02006) outer
membrane protein (ompA) [Salmonella typhimurium]
Length = 350
Score = 47.9 bits (112), Expect = 8e-05
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIA---PVLNGIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F + ++P + L + L+ + + G TD + N
Sbjct: 221 LKSDVLFNFNKSTLKPEGQQALDQLYIQLSNLDPKDGSVVVLGFTDRI---GSDAY--NQ 275
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
LS RA + L+ G+ S K + GM + ++ D A +RR+
Sbjct: 276 GLSEKRAQSVVDYLISKGIPSDK-ISARGMGESNPVTGNTCDNVKPRAALIDCLAPDRRV 334
Query: 261 SL 262
+
Sbjct: 335 EI 336
gi|2984343 (AE000775) peptidoglycan associated lipoprotein [Aquifex aeolicus]
Length = 203
Score = 47.9 bits (112), Expect = 8e-05
Identities = 32/153 (20%), Positives = 58/153 (36%), Gaps = 11/153 (7%)
Query: 116 RKLRGDLDQLIE--SDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMR 173
++ +LD+ + R H +I E L+I + Q R F + + +
Sbjct: 58 KENIANLDKRVSALESDVDSLRREHEEIRAEIEKLKITGKE-QVRVYFDSNKFTLRDDAK 116
Query: 174 DILRAIAPVLNGIP-NRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDS 232
L + + ++ + G+ D G +GY N+ELS RA L+ G+
Sbjct: 117 ATLDELIDAVRDKDIKKVIVVGYADPR----GTRGY-NFELSMKRAQNVAAYLIKNGIPV 171
Query: 233 GKVLRVVGMAATMRLSDRGPDDAVNRRISLLVL 265
KV R+ + G R + ++VL
Sbjct: 172 EKV-RIASYGE-ELANLIGERHPEQRAVDVIVL 202
sp|P24017|OMPA_KLEPN OUTER MEMBRANE PROTEIN A (OUTER MEMBRANE PROTEIN II) >gi|149286
(M63355) outer membrane protein II [Klebsiella
pneumoniae]
Length = 243
Score = 47.6 bits (111), Expect = 1e-04
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + G+TD E N
Sbjct: 123 LKSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTDRI---GSEAY--NQ 177
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
+LS RA + L+ G+ +GK + GM + ++ D A +RR+
Sbjct: 178 QLSEKRAQSVVDYLVAKGIPAGK-ISARGMGESNPVTGNTCDNVKARAALIDCLAPDRRV 236
Query: 261 SL 262
+
Sbjct: 237 EI 238
gi|841126 (U16849) outer membrane protein, similar to Haemophilus influenzae
outer membrane protein P6, Swiss-Prot Accession Number
P10324 [Pasteurella multocida]
Length = 150
Score = 47.6 bits (111), Expect = 1e-04
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 150 IQIIDSQNR---PMFRTGSADVEPYMRDILRAIAPVLNGIP-NRISLSGHTDDFPYASGE 205
+ D Q R F ++E IL A A LN P ++ + G+TD+
Sbjct: 36 YSVQDLQQRYNTVYFGFDKYNIEGEYVQILDAHAAFLNATPATKVVVEGNTDER---GTP 92
Query: 206 KGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS---DRGPDDAVNRRISL 262
+ N L RA+A + L G+ +G+V V D + NRR L
Sbjct: 93 EY--NIALGQRRADAVKHYLSAKGVQAGQVSTVS-YGEEKPAVLGHDEAAY-SKNRRAVL 148
gnl|PID|e1296719 (AJ000998) outer membrane protein A [Klebsiella pneumoniae]
Length = 344
Score = 47.6 bits (111), Expect = 1e-04
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + G+TD E N
Sbjct: 215 LKSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTDRI---GSEAY--NQ 269
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
+LS RA + L+ G+ +GK + GM + ++ D A +RR+
Sbjct: 270 QLSEKRAQSVVDYLVAKGIPAGK-ISARGMGESNPVTGNTCDNVKARAALIDCLAPDRRV 328
Query: 261 SL 262
+
Sbjct: 329 EI 330
gi|148368 (M63356) outer membrane protein II [Enterobacter aerogenes]
Length = 238
Score = 46.8 bits (109), Expect = 2e-04
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + + G TD + N
Sbjct: 118 LKSDVLFNFNKATLKPEGQQALDQLYTQLSNLDPKDGSVVVLGFTDRI---GSDAY--NQ 172
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
LS RA + L+ G+ + K + GM + ++ D A +RR+
Sbjct: 173 GLSEKRAQSVVDYLVSKGIPANK-ISPRGMGESNPVTGSTCDNVKPRAALIDCLAPDRRV 231
Query: 261 SL 262
+
Sbjct: 232 EI 233
sp|P38367|OMP4_NEIME OUTER MEMBRANE PROTEIN CLASS 4 PRECURSOR >gi|95434|pir||A37004
outer membrane class 4 protein precursor (rmpM) -
Neisseria meningitidis
Length = 240
Score = 46.4 bits (108), Expect = 2e-04
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 153 IDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIP-NRISLSGHTDDFPYASGEKGYSNW 211
I + +F + +D L+ +A L + + GHTD + +K N
Sbjct: 95 ISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLGQTNIQSVRVEGHTD---FMGSDKY--NQ 149
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATM 245
LS RA L+ G+ + + VG+ +
Sbjct: 150 ALSERRAYVVANNLVSNGVPVSR-ISAVGLGESQ 182
sp|P09146|OMPA_ENTAE OUTER MEMBRANE PROTEIN A PRECURSOR >gi|95556|pir||S07222 outer
membrane protein ompA precursor - Enterobacter aerogenes
>gi|40838 (X00254) OmpA protein [Enterobacter aerogenes]
Length = 350
Score = 45.6 bits (106), Expect = 4e-04
Identities = 24/134 (17%), Positives = 48/134 (34%), Gaps = 10/134 (7%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + G+TD N
Sbjct: 221 LKSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTDRI-----GSEQYNQ 275
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQ 271
+LS RA + L+ G+ + K + GM + ++ D+ R + L
Sbjct: 276 KLSEKRAQSVVDYLVAKGIPANK-ISARGMGESDPVTGNTCDNVKARAALIDCLAPDRRV 334
Query: 272 AI-LHENAESQNEP 284
AI + + +P
Sbjct: 335 AIEVKGYKDVVTQP 348
pir||I62385 outer membrane protein II - Escherichia vulneris (fragment)
>gi|146985 (M63348) outer membrane protein II
[Escherichia vulneris]
Length = 238
Score = 45.2 bits (105), Expect = 5e-04
Identities = 20/107 (18%), Positives = 40/107 (36%), Gaps = 9/107 (8%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F A ++P + L + L+ + G+TD N
Sbjct: 118 LKSDVLFNFNKATLKPEGQQALDQLYTQLSNMDPKDGSAVVLGYTDRI-----GSEQYNQ 172
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNR 258
+LS RA + L+ G+ + K + GM + ++ D+ R
Sbjct: 173 KLSEKRAQSVVDYLVAKGIPANK-ISARGMGESDPVTGNTCDNVKAR 218
gi|1150840 (U42466) 18 kDa outer membrane protein [Haemophilus ducreyi]
Length = 157
Score = 45.2 bits (105), Expect = 5e-04
Identities = 29/122 (23%), Positives = 43/122 (34%), Gaps = 14/122 (11%)
Query: 143 LVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYA 202
+ E L N F S VE R +L A A L ++++++GH D+
Sbjct: 46 MTTEDL----QTRYNTVYFNFDSYAVEGEYRQLLDAHAAYLTSSNSKVTVTGHADER--- 98
Query: 203 SGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS--DRGPDDAVNRRI 260
+ N L RA+A + L G+ + V D A NRR
Sbjct: 99 GTPEY--NIALGQRRADAVKNYLATKGVSQ---VSTVSYGEEKPSVLGHTEADYAKNRRA 153
Query: 261 SL 262
L
Sbjct: 154 VL 155
pir||I62391 outer membrane protein II - Escherichia blattae (ATCC 33429)
(fragment) >gi|146997 (M63344) outer membrane protein II
[Escherichia blattae]
Length = 241
Score = 44.4 bits (103), Expect = 9e-04
Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F + ++P + L + L+ + + G+TD + N
Sbjct: 121 LKSDVLFNFNKSTLKPEGQQALDQLYTQLSNLDPKDGAVVVLGYTDRI---GSDAY--NQ 175
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
LS RA + L+ G+ +GK + G + ++ D A +RR+
Sbjct: 176 RLSQQRAQSVVDYLVSKGIPAGK-ITAQGQGESNPVTGSTCDNVKQRAALIDCLAPDRRV 234
Query: 261 SL 262
+
Sbjct: 235 EI 236
pir||I62394 outer membrane protein II - Escherichia blattae (ATCC 33430)
(fragment) >gi|147003 (M63345) outer membrane protein II
[Escherichia blattae]
Length = 240
Score = 44.4 bits (103), Expect = 9e-04
Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F + ++P + L + L+ + + G+TD + N
Sbjct: 120 LKSDVLFNFNKSTLKPEGQQALDQLYTQLSNLDPKDGAVVVLGYTDRI---GSDAY--NQ 174
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
LS RA + L+ G+ +GK + G + ++ D A +RR+
Sbjct: 175 RLSQQRAQSVVDYLVSKGIPAGK-ITAQGQGESNPVTGSTCDNVKQRAALIDCLAPDRRV 233
Query: 261 SL 262
+
Sbjct: 234 EI 235
sp|P04845|OMPA_SERMA OUTER MEMBRANE PROTEIN A PRECURSOR >gi|96890|pir||S07298 outer
membrane protein ompA precursor - Serratia marcescens
>gi|758300 (X00618) ompA protein [Serratia marcescens]
Length = 359
Score = 44.4 bits (103), Expect = 9e-04
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 22/124 (17%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F + ++ + L + L+ + + G+TD N
Sbjct: 228 LKSDVLFNFNKSTLKAEGQQALDQLYTQLSSMDPKDGSVVVLGYTDAV-----GSDQYNQ 282
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPD-------------DAVNR 258
+LS RA + L+ G+ S K + GM ++ A +R
Sbjct: 283 KLSEQRAQSVVDYLVSKGIPSDK-ISARGMGEADAVTGNTCGYKSGRATKAQIVCLAPDR 341
Query: 259 RISL 262
R+ +
Sbjct: 342 RVEI 345
gnl|PID|e185551 (X89009) PALA outer membrane protein precursor [Actinobacillus
pleuropneumoniae]
Length = 152
Score = 44.4 bits (103), Expect = 9e-04
Identities = 29/122 (23%), Positives = 43/122 (34%), Gaps = 14/122 (11%)
Query: 143 LVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYA 202
+ E L N F S VE + +L A A L +++++GH D+
Sbjct: 41 MTAEDL----QTRYNTVYFGFDSYAVEGEYQQLLDAHAAYLTSANGKVTVAGHADER--- 93
Query: 203 SGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMR--LSDRGPDDAVNRRI 260
+ N L RA+A + L G + + V L D A NRR
Sbjct: 94 GTPEY--NIALGQRRADAVKNYLATKGANQ---VSTVSYGEEKPAVLGHTEADYAKNRRA 148
Query: 261 SL 262
L
Sbjct: 149 VL 150
sp|P07176|PAL_ECOLI PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN PRECURSOR
>gi|72588|pir||LPECPG peptidoglycan-associated
lipoprotein precursor - Escherichia coli >gi|41360
(X65796) peptidoglycan-associated lipoprotein
[Escherichia coli] >gi|42257 (X05123) precursor
polypeptide (AA-21 to -1) [Escherichia coli]
>gi|1651333|gnl|PID|d1015223 (D90713)
Peptidoglycan-associated lipoprotein precursor
[Escherichia coli] >gi|1786962 (AE000177)
peptidoglycan-associated lipoprotein precursor; 21 aa
signal peptide [Escherichia coli]
Length = 173
Score = 44.1 bits (102), Expect = 0.001
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 149 RIQIIDSQNRPM--FRTGSADVEPYMRDILRAIAPVLNGIP-NRISLSGHTDDFPYASGE 205
R+Q+ Q + F D+ +L A A L P ++++ GH D+
Sbjct: 59 RLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADER---GTP 115
Query: 206 KGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS---DRGPDDAVNRRISL 262
+ N L RANA + L G+ S + +V D + NRR L
Sbjct: 116 EY--NISLGERRANAVKMYLQGKGV-SADQISIVSYGKEKPAVLGHDEAAY-SKNRRAVL 171
Query: 263 L 263
+
Sbjct: 172 V 172
gi|2828561 (AF005079) outer membrane protein 34; Omp34 [Actinobacillus
actinomycetemcomitans]
Length = 346
Score = 44.1 bits (102), Expect = 0.001
Identities = 24/123 (19%), Positives = 47/123 (37%), Gaps = 18/123 (14%)
Query: 154 DSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPN-RISLSGHTDDFPYASGEKGYSNWE 212
+ F G A+++P ++ L I + + N + ++G+TD + N +
Sbjct: 226 SLNSDVTFAFGKANLKPQAQNTLDGIYGEIAQVNNANVQVAGYTDRI---GSDAY--NQK 280
Query: 213 LSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDD-------AVNRRIS 261
LS RA L+ G+ S + + G ++ D A +RR+
Sbjct: 281 LSQRRAETVANYLVSKGV-SQQAISATGHGKANPVTGNKCDAVKGRKALIACLADDRRVE 339
Query: 262 LLV 264
+ V
Sbjct: 340 IAV 342
gi|3329044 (AE001330) Peptidoglycan-Associated Lipoprotein [Chlamydia
trachomatis]
Length = 188
Score = 43.7 bits (101), Expect = 0.002
Identities = 20/108 (18%), Positives = 38/108 (34%), Gaps = 10/108 (9%)
Query: 161 FRTGSADVEPYMRDILRA--IAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRA 218
F T S ++ + A + + + + GHTD+ N L A RA
Sbjct: 84 FATDSYSIKGEDNLTILASLVRHLHKSPKATLYIEGHTDER-----GAAAYNLALGARRA 138
Query: 219 NASRRELMVGGLDSGKVLRVVGMAATMRLSD--RGPDDAVNRRISLLV 264
NA ++ L+ G+ + ++ + + NRR +
Sbjct: 139 NAVKQYLIKQGIAADRLFTIS-YGKEHPVHPGHNELAWQQNRRTEFKI 185
sp|Q99124|OMPA_ESCBL OUTER MEMBRANE PROTEIN A (OUTER MEMBRANE PROTEIN II)
>gi|2147834|pir||I62387 outer membrane protein II -
Escherichia blattae (fragment) >gi|146989 (M63343) outer
membrane protein II [Escherichia blattae]
Length = 241
Score = 43.3 bits (100), Expect = 0.002
Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPVLN---GIPNRISLSGHTDDFPYASGEKGYSNW 211
++ +F + ++P + L + L+ + + G+TD + N
Sbjct: 121 LKSDVLFNFNKSTLKPEGQQALDQLYTQLSNLDPKDGAVVVLGYTDRI---GSDAY--NQ 175
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDDAV-------NRRI 260
LS RA + L+ G+ +GK + G + ++ D A +RR+
Sbjct: 176 RLSQQRAQSVVDYLVSKGIPAGK-ITAQGQGESNPVTGNTCDNVKKRAALIDCLAPDRRV 234
Query: 261 SL 262
+
Sbjct: 235 EI 236
gi|1572563 (U67194) Upf30.5 [Enterobacter aerogenes]
Length = 142
Score = 43.3 bits (100), Expect = 0.002
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 15/120 (12%)
Query: 147 GLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNR--ISLSGHTDD-FPYAS 203
G I S F SA +P + +L N I +SG T P A+
Sbjct: 26 GNFGTPIKSGVSVSFPDSSATFQPTPEAL-----ELLADARNAAIIYISGRTSTLRPSAA 80
Query: 204 GEKGYSNWELSADRANASRRELMVGGLDSGKVL-RVVGMAATMRLSDRGPDDAVNRRISL 262
E L+ RA ++R L+ G+ K++ A + + N+R+ +
Sbjct: 81 DEA------LALRRALSARSYLVARGVSPLKIMVNFASAADFVADNSTAEGRRENQRVDI 134
gi|1872471 (U60646) OmpA2 [Haemophilus ducreyi]
Length = 407
Score = 40.5 bits (93), Expect = 0.013
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 157 NRPMFRTGSADVEPYMRDILR----AIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWE 212
+ +F AD++ +L I + P I ++G+TD K +N +
Sbjct: 284 SDVLFDFAKADLKQEAAQVLDATNAEIVNLGLATP-AIQVNGYTDRI-----GKEEANLK 337
Query: 213 LSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNR 258
LS RA L+ G + + VG ++ D R
Sbjct: 338 LSQRRAEMVANYLVAKGQNPVS-INAVGYGEANPITGNTCDAVKGR 382
gi|2314278 (AE000619) peptidoglycan associated lipoprotein precursor (omp18)
[Helicobacter pylori]
Length = 179
Score = 39.8 bits (91), Expect = 0.022
Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 11/117 (9%)
Query: 148 LRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKG 207
II F +++ ++ L I ++ L G+TD+F
Sbjct: 68 ESGTII---ASIYFDFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEF-----GSS 119
Query: 208 YSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMR--LSDRGPDDAVNRRISL 262
N L R + + L++ G++ + + T NRR+ +
Sbjct: 120 EYNQALGVKRTLSVKNALVIKGVEKDMIKTIS-FGETKPKCAQKTRECYKENRRVDV 175
gi|1872470 (U60646) major outer membrane protein [Haemophilus ducreyi]
Length = 403
Score = 39.4 bits (90), Expect = 0.029
Identities = 24/129 (18%), Positives = 44/129 (33%), Gaps = 22/129 (17%)
Query: 157 NRPMFRTGSADVEPYMRDILR----AIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWE 212
+ +F AD++ +L I + P I ++G+TD G N +
Sbjct: 280 SDVLFDFAKADLKQEAAQVLDATNTEIVNLGLATP-AIQVNGYTDRI-----GSGDVNLK 333
Query: 213 LSADRANASRRELMVGGLDSGKVLRVVGMAATMRLS----DRGPDD-------AVNRRIS 261
LS RA L+ G + + VG ++ D A +RR+
Sbjct: 334 LSQRRAETVANYLVAKGQNPVS-INAVGYGEANPITGNTCDAVKGRKQLIACLAPDRRVE 392
Query: 262 LLVLNKQAE 270
+ + +
Sbjct: 393 VQIQGTKEV 401
gnl|PID|e205331 (X91983) outer membrane protein [Aeromonas salmonicida]
>gi|1588798|prf||2209353A major outer membrane protein
OmpAI [Aeromonas salmonicida]
Length = 339
Score = 38.2 bits (87), Expect = 0.066
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 20/131 (15%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPV---LNGIPNRISLSGHTDDFPYASGEKGYSNW 211
+ +F G ++ + L ++ + G+TD + N
Sbjct: 214 LNSDVLFAFGKDSLKAEGVEALNSLYQQIVDFQPKDGSAVVVGYTDRI---GSDAY--NQ 268
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPD-----------DAVNRRI 260
+LS RA L+ G+ + KV V G ++ D A +RR+
Sbjct: 269 KLSEARARTVANFLVSKGMAASKV-AVEGRGEANPVTGNKCDGVKAKAQLISCLAPDRRV 327
Query: 261 SLLVLNKQAEQ 271
+ V Q Q
Sbjct: 328 EIRVSGVQVVQ 338
gnl|PID|e1252186 (Y15044) LphA protein [Legionella pneumophila]
Length = 189
Score = 35.5 bits (80), Expect = 0.44
Identities = 24/142 (16%), Positives = 50/142 (34%), Gaps = 12/142 (8%)
Query: 123 DQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPV 182
+I+ L +K+ V + I I +F S + +L IA
Sbjct: 51 ATIIKMMTDLNKKG--IKVASVGQNYLISI---PASALFADQSPRLNWASYSLLNEIAAF 105
Query: 183 LNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMA 242
L +I+++ + Y S ++ L+ R+ L G+ +++ G+
Sbjct: 106 LKQF-RKIAITVTSYSSKYVSVKRER---ALTLARSRVVSEYLWSQGV-DSRIIFTQGLG 160
Query: 243 ATMR--LSDRGPDDAVNRRISL 262
+ G D + N R+ +
Sbjct: 161 SDKPITSYTLGGDRSPNARVEI 182
gnl|PID|d1020899 (AB003590) sulfate transporter [Arabidopsis thaliana]
>gi|2114106|gnl|PID|d1020900 (AB003591) sulfate
transporter [Arabidopsis thaliana]
Length = 677
Score = 34.7 bits (78), Expect = 0.75
Identities = 11/48 (22%), Positives = 21/48 (42%), Gaps = 2/48 (4%)
Query: 26 WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGG 73
WK+ DF+ + AFF V++ L+ + F + ++ G
Sbjct: 484 WKVDKFDFLALIGAFFGVLFA--SVEIGLLVAVVISFAKIILISIRPG 529
pir||I48742 ryanodine receptor type 2 - mouse (fragment) >gi|639815 (X83933)
ryanodine receptor type 2 [Mus musculus]
Length = 822
Score = 33.9 bits (76), Expect = 1.3
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 22/123 (17%)
Query: 11 VKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAV 70
+KR K + D + +AFF W + ++ + + F +++ +
Sbjct: 123 MKRMKK-----------MTVKDMV---LAFFSSYWSVFVTLLHFVASVCRGFFRIVSSLL 168
Query: 71 TGGDRISNSESP--------IPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDL 122
GG + ++ +P D + E ++ +E + + L++L +
Sbjct: 169 LGGSLVEGAKKTKVAELLANMPDPTQDEVRGDEEEGERKPLESALPSEDLTDLKELTEES 228
Query: 123 DQL 125
D L
Sbjct: 229 DLL 231
bbs|176675 trypsin-like protease {500 bp clone 2} [Simulium
damnosum=blackflies, infected with Onchocerca ochengi,
Peptide Partial, 152 aa]
Length = 152
Score = 33.9 bits (76), Expect = 1.3
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 210 NWELSADRANASRRE-LMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQ 268
N EL+ DR G+ G+ +V G AT +D G R + + +++++
Sbjct: 59 NAELTLDRTKQIVALPAQDEGVVEGRYYKVSGWGATKNSNDTGNGL---RAVYVPIVSQE 115
Query: 269 AEQAILHENA 278
+ + E+
Sbjct: 116 ECRKVYSESG 125
gnl|PID|d1013494 (D85416) sulfate transporter [Arabidopsis thaliana]
Length = 658
Score = 33.5 bits (75), Expect = 1.7
Identities = 23/130 (17%), Positives = 47/130 (35%), Gaps = 5/130 (3%)
Query: 26 WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGDRISNSESPIPG 85
WK+ DF+ + AFF V++ L+ + F + +++ S
Sbjct: 457 WKLDKLDFLVLIAAFFGVLFA--SVEIGLLLAVGISFARIMLSSIRPSIEALGRLSKTDI 514
Query: 86 GGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQ 145
GD NK + L+ D+++ S ++ ++ L +
Sbjct: 515 FGD--INQYPMANKTAGLLTLRISSPLLCFANANFIRDRILNSVQEIEGEENEQEV-LKE 571
Query: 146 EGLRIQIIDS 155
GL++ I+D
Sbjct: 572 NGLQVVILDM 581
gnl|PID|d1026102 (AB012047) sulfate transporter [Arabidopsis thaliana]
Length = 658
Score = 33.5 bits (75), Expect = 1.7
Identities = 23/130 (17%), Positives = 47/130 (35%), Gaps = 5/130 (3%)
Query: 26 WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGDRISNSESPIPG 85
WK+ DF+ + AFF V++ L+ + F + +++ S
Sbjct: 457 WKLDKLDFLVLIAAFFGVLFA--SVEIGLLLAVGISFARIMLSSIRPSIEALGRLSKTDI 514
Query: 86 GGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQ 145
GD NK + L+ D+++ S ++ ++ L +
Sbjct: 515 FGD--INQYPMANKTAGLLTLRISSPLLCFANANFIRDRILNSVQEIEGEENEQEV-LKE 571
Query: 146 EGLRIQIIDS 155
GL++ I+D
Sbjct: 572 NGLQVVILDM 581
sp|P53393|SUT3_STYHA LOW AFFINITY SULPHATE TRANSPORTER 3 >gi|1085993|pir||S51765 low
affinity sulphate transporter - Stylosanthes hamata
>gi|607188 (X82454) low affinity sulphate transporter
[Stylosanthes hamata]
Length = 644
Score = 33.1 bits (74), Expect = 2.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 26 WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGG 73
WK+ DF+ + AFF V+++ LI ++ F L A+ G
Sbjct: 447 WKVDKFDFLACLGAFFGVLFV--SIEIGLLIALSISFAKILLQAIRPG 492
gnl|PID|e205291 (X91983) outer membrane protein [Aeromonas salmonicida]
>gi|1588799|prf||2209353B major outer membrane protein
OmpAII [Aeromonas salmonicida]
Length = 330
Score = 33.1 bits (74), Expect = 2.2
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 20/130 (15%)
Query: 155 SQNRPMFRTGSADVEPYMRDILRAIAPV---LNGIPNRISLSGHTDDFPYASGEKGYSNW 211
+ +F G + ++P L + + + G+TD + N
Sbjct: 205 LSSDVLFAFGKSTLKPEGVAALNTLYHQNVDVQPKDGSAVVVGYTDRI---GSDAY--NL 259
Query: 212 ELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPD-----------DAVNRRI 260
+LS RA L+ GL +GKV + G ++ D A +RR+
Sbjct: 260 KLSEARARTVADFLVGKGLPAGKV-AIEGRGEASPVTGTQCDGIKAKAQLIACLAPDRRV 318
Query: 261 SLLVLNKQAE 270
+ V Q
Sbjct: 319 EVRVTGIQEV 328
gi|2895292 (AF026534) DotK [Legionella pneumophila]
Length = 134
Score = 33.1 bits (74), Expect = 2.2
Identities = 19/112 (16%), Positives = 40/112 (34%), Gaps = 7/112 (6%)
Query: 153 IDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWE 212
I +F S + +L IA L +I+++ + Y S ++
Sbjct: 21 ISIPASALFADQSPRLNWASYSLLNEIAAFLKQF-RKIAITVTSYSSKYVSVKRER---A 76
Query: 213 LSADRANASRRELMVGGLDSGKVLRVVGMAATMR--LSDRGPDDAVNRRISL 262
L+ R+ L G+ +++ G+ + G D + N R+ +
Sbjct: 77 LTLARSRVVSEYLWSQGV-DSRIIFTQGLGSDKPITSYTLGGDRSPNARVEI 127
gi|2351768 (U89711) PspA [Streptococcus pneumoniae]
Length = 653
Score = 32.8 bits (73), Expect = 2.9
Identities = 32/231 (13%), Positives = 67/231 (28%), Gaps = 21/231 (9%)
Query: 80 ESPIPGGGDD--YTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRP 137
E I G + + Q NI++ +K +E + L +L++++ + +
Sbjct: 244 EDYIKEGLEQAITNKKAELATTQQNIDKTQKDLEDAEL-----ELEKVLATLDPEGKTQD 298
Query: 138 HLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTD 197
L + + L ++ QN+ A++E + + + G +
Sbjct: 299 ELDKEAAEAELNEKVEALQNQV------AELEEELSKLEDNLKDAETNNVEDYIKEGLEE 352
Query: 198 DFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVN 257
E + EL A EL G + + ++ + A
Sbjct: 353 AIATKKAELEKTQKELDAA-----LNELGPDGDEEETPAPA---PQPEKPAEEPENPAPA 404
Query: 258 RRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVSVPTMPSAEPR 308
+ + E E K E P P+ P+
Sbjct: 405 PKPEKSADQQAEEDYARRSEEEYNRLTQQQPPKAEKPAPAPQPEQPAPAPK 455
gnl|PID|d1006586 (D28887) H. influenzae outermembrane P6 protein homologue
[Haemophilus parainfluenzae]
Length = 91
Score = 32.4 bits (72), Expect = 3.8
Identities = 25/90 (27%), Positives = 40/90 (43%), Gaps = 9/90 (10%)
Query: 150 IQIIDSQNR---PMFRTGSADVEPYMRDILRAIAPVLNGIP-NRISLSGHTDDFPYASGE 205
+ D Q R F ++E IL A A LN P +++ + G+TD+
Sbjct: 5 YSVEDLQQRYNTVYFGFDKFNIEGEYVQILDAHAAYLNATPASKVVVEGNTDER---GTP 61
Query: 206 KGYSNWELSADRANASRRELMVGGLDSGKV 235
+ N L RA+A + L G+D+GK+
Sbjct: 62 EY--NIALGQRRADAVKGFLTGKGVDAGKL 89
gnl|PID|d1029569 (AB007912) SCG10-related protein HiAT3 [Mus musculus] >gi|3212095
(AF069708) SCG10-like-protein [Mus musculus]
Length = 180
Score = 32.4 bits (72), Expect = 3.8
Identities = 14/69 (20%), Positives = 29/69 (41%), Gaps = 1/69 (1%)
Query: 71 TGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDP 130
+G +SP + S K ++EEL+KR+E + R+ + Q+++
Sbjct: 50 SGQSFEVILKSPSDLSPESPVLSSPPKRKDASLEELQKRLEAAEERR-KTQEAQVLKQLA 108
Query: 131 KLRALRPHL 139
+ R +
Sbjct: 109 ERREHEREV 117
gi|3342372 (AF055975) NADH dehydrogenase subunit II [Chamaeleolis
chamaeleonides]
Length = 341
Score = 32.4 bits (72), Expect = 3.8
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 22 AHGSWKIAYADFMTAMMAFFLV--------MWLISISSPKELIQ 57
AH W + MT ++ ++ M+ + I S + IQ
Sbjct: 181 AHLGWMATISSIMTNILLMNILIYLVLTTSMFSMFIFSKSKTIQ 224
sp|P36043|YKU1_YEAST 64.6 KD PROTEIN IN TOR2-PAS1 INTERGENIC REGION
>gi|539218|pir||S38038 hypothetical protein YKL201c -
yeast (Saccharomyces cerevisiae)
Length = 539
Score = 32.0 bits (71), Expect = 4.9
Identities = 10/51 (19%), Positives = 21/51 (40%)
Query: 88 DDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPH 138
+D + + E ++ EE K+ E +K + + E + K + H
Sbjct: 487 EDEEKKKNEEEEKKKQEEKNKKNEDEEKKKQEEEEKKKNEEEEKKKQEEGH 537
gnl|PID|d1012343 (D83006) gene required for phosphoylation of oligosaccharides/ has
high homology with YJR061w [Saccharomyces cerevisiae]
Length = 1178
Score = 32.0 bits (71), Expect = 4.9
Identities = 10/51 (19%), Positives = 21/51 (40%)
Query: 88 DDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPH 138
+D + + E ++ EE K+ E +K + + E + K + H
Sbjct: 1126 EDEEKKKNEEEEKKKQEEKNKKNEDEEKKKQEEEEKKKNEEEEKKKQEEGH 1176
gnl|PID|e1283519 (Z28201) ORF YKL201c [Saccharomyces cerevisiae]
Length = 660
Score = 32.0 bits (71), Expect = 4.9
Identities = 10/51 (19%), Positives = 21/51 (40%)
Query: 88 DDYTQSQGEVNKQPNIEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPH 138
+D + + E ++ EE K+ E +K + + E + K + H
Sbjct: 608 EDEEKKKNEEEEKKKQEEKNKKNEDEEKKKQEEEEKKKNEEEEKKKQEEGH 658
gi|3342302 (AF055940) NADH dehydrogenase subunit II [Anolis sagrei]
Length = 345
Score = 31.6 bits (70), Expect = 6.5
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 22 AHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVT 71
AH W IA + MT +M L+++LI + + + T
Sbjct: 185 AHLGWMIAISSIMTHLMVMNLMIYLI--MTSALFQALICSKSKTIQDTTT 232
gi|3342328 (AF055953) NADH dehydrogenase subunit II [Anolis brevirostrus]
Length = 345
Score = 31.6 bits (70), Expect = 6.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 22 AHGSWKIAYADFMTAMMAFFLVMWLI 47
AH W A A MT +M L+++L+
Sbjct: 185 AHLGWMAAIASIMTNIMIMNLLIYLM 210
gi|3342356 (AF055967) NADH dehydrogenase subunit II [Anolis angusticeps]
Length = 345
Score = 31.6 bits (70), Expect = 6.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 22 AHGSWKIAYADFMTAMMAFFLVMWLI 47
AH W + MT ++ LV++LI
Sbjct: 185 AHLGWMATISSIMTNILILNLVLYLI 210
gi|3342364 (AF055971) NADH dehydrogenase subunit II [Anolis alutaceous]
Length = 345
Score = 31.6 bits (70), Expect = 6.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 22 AHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYF 62
AH W A + MT ++ L+++LI +S I I +
Sbjct: 185 AHLGWMAAISSIMTNILILNLLIYLIMTTSVFCFIIITKSK 225
gi|3603106 (U82680) NADH dehydrogenase subunit 2 [Basiliscus plumifrons]
Length = 345
Score = 31.6 bits (70), Expect = 6.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 22 AHGSWKIAYADFMTAMMAFFLVMW 45
AH W + MT +M L M+
Sbjct: 185 AHLGWMATISTMMTNIMVLNLFMY 208
gi|3342300 (AF055939) NADH dehydrogenase subunit II [Anolis equestris]
Length = 325
Score = 31.2 bits (69), Expect = 8.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 22 AHGSWKIAYADFMTAMMAFFLVMWLI 47
AH W I + MT +M L+++LI
Sbjct: 165 AHLGWMITVSSIMTNIMIMNLMIYLI 190
gi|3342330 (AF055954) NADH dehydrogenase subunit II [Anolis distichus]
Length = 345
Score = 31.2 bits (69), Expect = 8.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 22 AHGSWKIAYADFMTAMMAFFLVMWLI 47
AH W A MT +M L+++L+
Sbjct: 185 AHLGWMAIIATIMTNLMVMNLLIYLM 210
gi|3342342 (AF055960) NADH dehydrogenase subunit II [Anolis bartschi]
Length = 345
Score = 31.2 bits (69), Expect = 8.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 22 AHGSWKIAYADFMTAMMAFFLVMWLI 47
AH W + MT ++ L+++LI
Sbjct: 185 AHLGWMATISSIMTNLLIMNLLLYLI 210
gi|3342376 (AF055977) NADH dehydrogenase subunit II [Anolis luteogularis]
Length = 345
Score = 31.2 bits (69), Expect = 8.5
Identities = 7/26 (26%), Positives = 14/26 (52%)
Query: 22 AHGSWKIAYADFMTAMMAFFLVMWLI 47
AH W + MT ++ L++++I
Sbjct: 185 AHLGWMATISSIMTNILVMNLLLYMI 210
CPU time: 34.10 user secs. 0.53 sys. secs 34.63 total secs.
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Nov 10, 1998 9:15 PM
Number of letters in database: 102,282,742
Number of sequences in database: 335,094
Lambda K H
0.318 0.143 0.395
Gapped
Lambda K H
0.270 0.0501 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47998572
Number of Sequences: 335094
Number of extensions: 1735050
Number of successful extensions: 7477
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 7211
Number of HSP's gapped (non-prelim): 149
length of query: 308
length of database: 102282742
effective HSP length: 57
effective length of query: 251
effective length of database: 83182384
effective search space: 20878778384
effective search space used: 20878778384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)
