Figure 2 with descriptions. ++ = 99.9% confidence, + = 99.0% confidence

The other 44 positive control genes are as follows:

 average fold differences are listed, with confidence level for that measurement in parentheses (if it is over 95%)

gene name
cosmid
category
reference
wt/glp-4 L2
wt/glp-4 L3
wt/glp-4 L4
wt/glp-4 adult
fem-1/fem-3 adult
fem-3/fem-1 adult
ima-2
F26B1.3
intrinsic
S. Adam, pers. comm.
2.1
1.8 (95%)
2.4 (95%)
7.3 (99.9%)
3.4 (99%)
0.29
pgl-3
C18G1.4
intrinsic
S. Strome, pers. comm.
1.3
2.2 (99%)
4.0 (99.9%)
12.8 (99.9%)
1.4
0.70
him-14
ZK1127.11
intrinsic
Zalevsky et al (1999). Genetics 153, 1271-1283.
0.91
0.96
0.54
0.75
0.76
1.3
cya-1
ZK507.6
intrinsic
Kreutzer et al (1995). J. Cell Sci. 108, 2415-2424.
no measure
0.85
0.94
0.90
0.67
1.5 (95%)
nos-2
ZK1127.1
unknown
Subramaniam and Seydoux (1999). Development 126, 4861-4871.
0.68
1.1
1.4
2.9 (99%)
4.2 (99%)
0.23
gon-4
K04D7.5
unknown
J. Kimble, pers. comm.
0.93
1.2
1.7 (95%)
2.5 (99%)
1.3
0.78
air-1
K07C11.2
intrinsic
Schumacher et al (1998). Development 125, 4391-4402.
1.6
1.8
2.7 (99%)
6.5 (99.9%)
1.01
0.99
mes-3
F54C1.3
oocyte
Paulsen et al. (1995). Genetics 141, 1383-1398.
0.76
0.93
1.1
1.8 (99%)
2.3 (99.9%)
0.44
mes-6
C09G4.5
oocyte
Korf et al (1998). Development 125, 2469-2478.
no measure
1.1
1.1
1.3 (95%)
1.5 (99%)
0.68
spe-4
ZK524.1
sperm
L'Hernault et al (1992). J. Cell Biol. 119, 55-68.
0.94
0.98
1.2
0.92
0.37
2.7 (99.9%)
spe-9
C17D12.6
sperm
Singson et al (1998). Cell 93, 71-79.
0.95
1.0
1.1
1.1
0.33
3.0 (99.9%)
spe-27
C06E7.6
sperm
Minniti et al (1996). Genetics 143, 213-223.
0.72
0.84
0.74
1.1
.30
3.3 (99.9%)
cpb-1
C40H1.1
unknown
J. Kimble, pers. comm.
0.88
1.6 (95%)
2.1 (99%)
2.7 (99%)
0.55
1.8 (99%)
msp-40
C33F10.9
sperm
Ward et al (1988). J. Mol. Biol. 199, 1-13.
0.81
2.6 (95%)
48.1 (99.9%)
21.9 (99.9%)
0.06
16.8 (99.9%)
msp-113
ZK354.4
sperm
Ward et al (1988). J. Mol. Biol. 199, 1-13.
0.68
4.9 (95%)
83.3 (99.9%)
37.5 (99.9%)
0.01
71.2 (99.9%)
msp-51
ZK354.5
sperm
Ward et al (1988). J. Mol. Biol. 199, 1-13.
no measure
1.6
73.9 (99.9%)
57.5 (99.9%)
0.02
57.8 (99.9%)
msp-65
ZK354.1
sperm
Ward et al (1988). J. Mol. Biol. 199, 1-13.
0.83
1.8
33.9 (99.9%)
13.1 (99.9%)
0.09
10.7 (99.9%)
msp-53
R13H9.4
sperm
Ward et al (1988). J. Mol. Biol. 199, 1-13.
no measure
no measure
no measure
0.89
0.08
12.0 (99%)
msp-10
K07F5.2
sperm
S. Ward, unpub. data
no measure
2.1
83.5 (99.9%)
16.6 (99.9%)
0.03
29.7 (99.9%)
msp-3
F26G1.7
sperm
S. Ward, unpub. data
0.71
2.5
66.4 (99.9%)
25.9 (99.9%)
0.01
71.4 (99.9%)
msp-45
F58A6.8
sperm
S. Ward, unpub. data
no measure
2.2
71.9 (99.9%)
17.5 (99.9%)
0.02
51.8 (99.9%)
msp-46ps
F58A6.9
sperm
S. Ward, unpub. data
0.66
2.6 (95%)
56.4 (99.9%)
10.3 (99.9%)
0.02
29.2 (99.9%)
msp-50
C34F11.4
sperm
S. Ward, unpub. data
0.68
4.6 (99%)
98.2 (99.9%)
51.2 (99.9%)
0.02
60.7 (99.9%)
msp-49
C34F11.6
sperm
S. Ward, unpub. data
0.81
2.3
36.6 (99.9%)
15.1 (99.9%)
0.05
19.6 (99.9%)
msp-55
C09B9.6
sperm
S. Ward, unpub. data
0.65
4.6 (95%)
66.0 (99.9%)
47.1 (99.9%)
0.02
53.1 (99.9%)
msp-56
K07F5.3
sperm
S. Ward, unpub. data
0.99
5.4 (95%)
104.5 (99.9%)
63.1 (99.9%)
0.02
44.9 (99.9%)
msp-64
ZK1248.6
sperm
S. Ward, unpub. data
0.72
2.1
34.1 (99.9%)
7.7 (99%)
0.09
11.5 (99.9%)
msp-81
K07F5.1
sperm
S. Ward, unpub. data
0.65
2.1
22.6 (99.9%)
9.3 (99.9%)
0.10
9.1 (99.9%)
ssp-9
E03H12.10
sperm
S. Ward, unpub. data
no measure
1.4
4.7 (95%)
6.9 (99%)
0.03
28.6 (99.9%)
ssp-10
K07F5.9
sperm
S. Ward, unpub. data
0.90
2.9 (95%)
48.7 (99.9%)
5.9 (99%)
0.02
48.5 (99.9%)
ssp-16
T27A3.3
sperm
S. Ward, unpub. data
0.81
4.2 (99%)
43.0 (99.9%)
7.7 (99%)
0.03
35.8 (99.9%)
ssp-19
C55C2.2
sperm
S. Ward, unpub. data
0.70
2.3
36.3 (99.9%)
5.6 (99%)
0.03
28.7 (99.9%)
ssp-31
ZK1225.6
sperm
S. Ward, unpub. data
no measure
1.2
4.2 (99%)
0.81
0.11
8.7 (99.9%)
ssp-32
F32B6.7
sperm
S. Ward, unpub. data
no measure
1.4
3.7 (99.9%)
1.1
0.13
7.9 (99.9%)
ssq-2
T28H11.5
sperm
S. Ward, unpub. data
1.0
1.7
18.5 (99.9%)
4.6 (99%)
0.04
27.0 (99.9%)
ssq-3
ZC477.1
sperm
S. Ward, unpub. data
1.1
1.4
4.6 (99%)
2.2 (95%)
0.13
7.6 (99.9%)
ssq-4
T28H11.1
sperm
S. Ward, unpub. data
0.90
2.4 (95%)
8.7 (99.9%)
9.0 (99.9%)
0.06
17.1 (99.9%)
ssr-2
C16A11.7
sperm
S. Ward, unpub. data
1.0
1.1
5.5 (99.9%)
1.4
0.08
12.2 (99.9%)
sss-1
F32B6.5
sperm
S. Ward, unpub. data
1.0
3.0 (95%)
41.2 (99.9%)
13.2 (99.9%)
0.04
27.5 (99.9%)
sss-2
F47B8.11
sperm
S. Ward, unpub. data
0.78
1.5
23.7 (99.9%)
11.3 (99.9%)
0.02
64.1 (99.9%)
msp-78
T13F2.11
sperm
S. Ward, unpub. data
no measure
no measure
no measure
1.2
0.10
10.3 (99%)
msp-76
ZK1251.6
sperm
S. Ward, unpub. data
no measure
no measure
no measure
0.93
0.14
7.0 (99%)
ssr-1
F32B6.4
sperm
S. Ward, unpub. data
no data
no data
no data
no data
no data
no data
msp-29ps
ZK546.3
sperm
S. Ward, unpub. data
no measure
no measure
no measure
0.90
0.15
6.7 (99%)
spe-12
T02E1.1
sperm
Nance et al (1999). Genetics 152, 209-220.
no measure
no measure
no measure
0.94
0.83
1.2 (95%)

Reinke home pageReturnto the Reinke_et_al home page

Jim Lund (jiml@stanford.edu) helped build this site.