Genomics Publications from the Kim lab.

Southworth, L.K., Kim, S.K., Owen, A.B. (2008) Properties of balanced permutations. (Submitted)

Choi, J., Southworth, L.K., Sarin, K.Y., Venteicher, A.S., Ma, W., Chang, W., Cheung, P., Jun, S., Artandi, M.K., Shah, N., et al. (2008). TERT promotes epithelial proliferation through transcriptional control of a Myc- and Wnt-related developmental program. PLoS Genet 4, e10.

Long, F., Peng, H., Liu, X., Kim, S.K., and Myers, G. (2008). Automatic Recognition of Cells (ARC) for 3D images of C. elegans. Recomb.

Peng, H., Long, F., Liu, X., Kim, S.K., and Myers, E.W. (2008). Straightening Caenorhabditis elegans images. Bioinformatics (Oxford, England) 24, 234-242

Budovskaya, Y.V., Wu, K., Southworth, L.K., Jiang, M., Tedesco, P., Johnson, T.E., and Kim, S.K. (2008). An elt-3/elt-5/elt-6 GATA transcription circuit guides aging in C. elegans. Cell submitted.

J.M. Zahn and S.K. Kim. Systems biology of aging in four species, (2007) Current Opinion in Biotechnology, 18 (335-339)

Warren, L.A., Rossi, D.J., Schiebinger, G.R., Weissman, I.L., Kim, S.K., and Quake, S.R. (2007). Transcriptional instability is not a universal attribute of aging. Aging Cell 6, 775-782.

Zahn, J.M., Poosala, S., Owen, A.B., Ingram, D.K., Lustig, A., Carter, A., Weeraratna, A.T., Taub, D.D., Gorospe, M., Mazan-Mamczarz, K., Lakatta, E.G., Boheler, K.R., Xu, X., Mattson, M.P., Falco, G., Ko, M.S., Schlessinger, D., Firman, J., Kummerfeld, S.K., Wood, W.H. 3rd, Zonderman, A.B., Kim, S.K., Becker, K.G. (2007). AGEMAP: a gene expression database for aging in mice PLoS Genet 3, e201.

Kim, S.K. Genome-wide Views of Aging Gene Networks, Cold Spring Harbor (In press)

Kim, S.K. Common aging pathways in worms, flies, mice and humans. (2007) J Exp Biol. 2007 May 1;210(Pt 9):1607-12.

J.M. Zahn, R. Sonu, H. Vogel, E. Crane, K. Mazan-Mamczarz, R. Rabkin, R.W. Davis, K.G. Becker, A.B. Owen, S.K. Kim. Transcriptional Profiling in Human Muscle Reveals a Common Aging Signature. (2006) PLOS Genetics, 2(7): e115.

Y. Liu, S. Batzoglou, and S. K. Kim. Genome-wide Discovery of DNA Regulatory Motifs in C. elegans. submitted

F. Pauli, Y. Liu, Y. A. Kim, P.-J. Chen and S. K. Kim. Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans. (2006) Development. 133(2):287-95.

Graham E. J. Rodwell, Rebecca Sonu, Jacob M. Zahn, James Lund, Julie Wilhelmy, Lingli Wang, Wenzhong Xiao, Michael Mindrinos, Emily Crane, Eran Segal, Bryan D. Myers, Ronald W. Davis, John Higgins, Art B. Owen and Stuart K. Kim. A Transcriptional Profile of Aging in the Human Kidney. PLoS Biology, Dec 2004

Stuart, J. M.*, Segal, E.*, Koller, D#, and Kim, S. K#. A gene co-expression network for global discovery of conserved genetic modules, Science, 302, 249-255, 2003. *co first authors, #co-last authors

Kim et al., A gene expression map for C. elegans. Science 293: 2087-2092, 2001.

Publication Archives (2000 - 2003)

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