Publications from the Kim lab.

M. Zhong, W. Niu, Z. J. Lu, M. S., J. I. Murray, J. Janette, K. L. Sheaffer, H. Y.K. Lam, E. Preston, C. Slightham, L. W. Hillier, T. Brock, A. Agarwal, D. Raha, R. Auerbach, A. A. Hyman, M. Gerstein, S. E. Mango, S. K. Kim, R. H. Waterston, V. Reinke, M. Snyder. (2009) Genome-wide identification of binding sites defines distinct functions for C. elegans PHA-4/FOXA in development and environmental response. (submitted)

M. Sarov, J. Murray, A. Pozniakovski, K. Angermann, E. Preston, C. Slightam, X. Xu, R. Ejsmont, K. Reis, A. F. Stewart, V. Reinke, S. K. Kim, M. Snyder, R. Waterston, A. A. Hyman. (2009) The TF TransgeneOme of C. elegans: a fosmid transgene resource for in vivo analysis of transcription factor function. (submitted)

Long, F., Peng, H., Liu, X., Kim, S. K., Myers, E. (2009) A 3D digital atlas of C. elegans and its application to single-cell expression analysis. (submitted).

Liu, X., Long, F., Peng. H., Aerni, S. J., Jiang, M., Sanchez-Blanco, A., Murray, J. I., Preston, E., Mericle, Batzoglou, S., Myers, E. W., Kim, S. K. (2009) Analysis of gene regulation and cell fate from single-cell gene expression profiles in C. elegans. Cell (in press).

Southworth, L.K., Kim, S.K., Owen, A.B. (2009) Properties of balanced permutations. J. Comp. Bio. 16, 625-638.

Long, F., Peng, H., Liu, X., Kim, S.K., and Myers, G. (2008). Automatic Recognition of Cells (ARC) for 3D images of C. elegans. Recomb.

Peng, H., Long, F., Liu, X., Kim, S.K., and Myers, E.W. (2008). Straightening Caenorhabditis elegans images. Bioinformatics (Oxford, England) 24, 234-242

Budovskaya, Y.V., Wu, K., Southworth, L.K., Jiang, M., Tedesco, P., Johnson, T.E., and Kim, S.K. (2008). An elt-3/elt-5/elt-6 GATA transcription circuit guides aging in C. elegans. Cell 134, 291-303.

J.M. Zahn and S.K. Kim. Systems biology of aging in four species, (2007) Current Opinion in Biotechnology, 18 (335-339)

Zahn, J.M., Poosala, S., Owen, A.B., Ingram, D.K., Lustig, A., Carter, A., Weeraratna, A.T., Taub, D.D., Gorospe, M., Mazan-Mamczarz, K., Lakatta, E.G., Boheler, K.R., Xu, X., Mattson, M.P., Falco, G., Ko, M.S., Schlessinger, D., Firman, J., Kummerfeld, S.K., Wood, W.H. 3rd, Zonderman, A.B., Kim, S.K., Becker, K.G. (2007). AGEMAP: a gene expression database for aging in mice PLoS Genet 3, e201.

Kim, S.K. Genome-wide Views of Aging Gene Networks, (2007) Cold Spring Harbor (Cold Spring Harbor Press).

Kim, S.K. Common aging pathways in worms, flies, mice and humans. (2007) J Exp Biol. 2007 May 1;210(Pt 9):1607-12.

J.M. Zahn, R. Sonu, H. Vogel, E. Crane, K. Mazan-Mamczarz, R. Rabkin, R.W. Davis, K.G. Becker, A.B. Owen, S.K. Kim. Transcriptional Profiling in Human Muscle Reveals a Common Aging Signature. (2006) PLOS Genetics, 2(7): e115.

Graham E. J. Rodwell, Rebecca Sonu, Jacob M. Zahn, James Lund, Julie Wilhelmy, Lingli Wang, Wenzhong Xiao, Michael Mindrinos, Emily Crane, Eran Segal, Bryan D. Myers, Ronald W. Davis, John Higgins, Art B. Owen and Stuart K. Kim. A Transcriptional Profile of Aging in the Human Kidney. PLoS Biology, Dec 2004

Stuart, J. M.*, Segal, E.*, Koller, D#, and Kim, S. K#. A gene co-expression network for global discovery of conserved genetic modules, Science, 302, 249-255, 2003. *co first authors, #co-last authors

Kim et al., A gene expression map for C. elegans. Science 293: 2087-2092, 2001.

Publication Archives (2000 - 2008)

Search for the expression of your favorite gene from these publications:

updated November 6, 2008