Supplemental Table 2. Experiments included in the analysis

 

Most of the microarray data used in the analysis can be downloaded from the Stanford Microarray Database.  The publications included in the analysis are listed below along with their Stanford Microarray Database identifier.  Use the identifier to access the data associated with each publication at the Stanford Microarray Database public search site.

 

Organisma

Number of Arrays

SMD Publication IDb

Citation

H. sapiens

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

133

79

Alizadeh AA, et al. (2000) Nature 403(6769):503-11

17

92

Blader IJ, et al. (2001) J Biol Chem 276(26):24223-31

182

102

Boldrick JC, et al.(2002) Proc Natl Acad Sci U S A 99(2):972-977

207

107

Chen X, et al. (2002). Mol Biol Cell 13(6):1929-39

16

108

Cuadras MA, et al. (2002) J Virol 76(9):4467-82

53

89

Detweiler CS, et al. (2001) Proc Natl Acad Sci U S A 98(10):5850-5

73

100

Garber ME, et al. (2001) Proc Natl Acad Sci USA 98(24):13784-13789

18

4

Iyer VR, et al. (1999) Science 283(5398):83-7

84

38

Perou CM et al.(2000) Nature 406:747-52

26

6

Perou CM, et al. (1999) Proc Natl Acad Sci U S A 96(16):9212-7

102

104

Rosenwald A, et al. (2001) J Exp Med 194(11):1639-47

68

81

Ross DT et al.(2000) Nat Genet 24:227-35

24

94

Ross DT and Perou CM (2001) Dis Markers 17(2):99-109

85

95

Sorlie T, et al. (2001). Proc Natl Acad Sci U S A 98(19):10869-74

114

106

Whitfield ML, et al. (2002). Mol Biol Cell 13(6):1977-2000

D. melanogaster

 

75

183

Arbeitman MN, et al.(2002) Science 297(5590):2270-5

80

N/A

Furlong EE, et al. (2001) Science 293(5535):1629-33

C. elegans

979

N/A

Worm Experimentsc

S. cerevisae

 

 

 

 

 

 

 

 

 

 

 

7

3

Chu S, et al. (1998) Science 282(5389):699-705

7

1

DeRisi JL, et al. (1997) Science 278(5338):680-6

4

7

Ferea TL, et al. (1999) Proc Natl Acad Sci U S A 96(17):9721-6

156

37

Gasch AP, et al. (2000) Mol Biol Cell 11(12):4241-57

53

98

Gasch AP, et al. (2001).Mol Biol Cell 12(10):2987-3003

6

70

Gross C, et al. (2000) J Biol Chem 275(41):32310-6

304

N/A

Hughes TR et al. (2000) Cell 102(1):109-26

8

68

Ogawa N et al.(2000) Mol Biol Cell 11:4309-21

60

90

Spellman PT et al.(1998) Mol Biol Cell 9:3273-97

12

73

Sudarsanam P et al.(2000) Proc Natl Acad Sci U S A 97:3364-9

26

74

Zhu G, et al. (2000) Nature 406(6791):90-4

 

aClick on an organism to download all of the expression data for that organism.  The data is in zip format.  Unzipping the data will extract a tab-delimited ASCII text file with all of the data for the organism.

bClick on the publication identifier to access the Stanford Microarray Database record for this publication.

cThe C. elegans experiments are listed separately in this excel file.  The first column has the Stanford Microarray Database experiment identifier and the second column has a short description of the experiment.