| S-Table 2. A comparison of the genes identified as expressed in L1 muscle to muscle positive controls. | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| YKDB | |||||||||||||||
| Expression | In 1364 | YKDB | Expression | ||||||||||||
| Gene | Name | Pattern (a) | List? (b) | Clone (c) | Pattern (d) | Reference | |||||||||
| M03F4.2 | act-4 | M, ST | + | 124f5 | + | Stone, et al., Gene 131, 167-73 (1993). | |||||||||
| F40E10.3 | csq-1 | M, P | + | 170c12 | + | Cho et al., J Cell Sci 113, 3947-3958 (2000). | |||||||||
| T01D1.2 | etr-1 | M | - | 465f3 | - | Milne et al., Curr Biol. 9, 1243-6 (1999). | |||||||||
| B0304.1 | hlh-1 | M | - | 174f12 | - | Krausse et al., Dev Biol. 166, 133-48 (1994). | |||||||||
| C36E6.F | mlc-1 | M | + | 304b5 | + | Rushforth et al., Genetics 150, 1067-77 (1998). | |||||||||
| C36E6.B | mlc-2 | M | + | na | na | Rushforth et al., Genetics 150, 1067-77 (1998). | |||||||||
| K12F2.1 | myo-3 | M | + | "589e9" | + | Okkema et al., Genetics 135, 385-404 (1993). | |||||||||
| C44B12.2 | ost-1 | M, P, SG | + | 327f9 | + | Fitzgerald et al., Curr Biol 8, 1285-8 (1998). | |||||||||
| F54C1.7 | pat-10 | M | + | 597f2 | + | Terami et al., J Cell Biol 146, 193-202 (1999). | |||||||||
| C29F9.7 | pat-4 | M, SG, ST | + | 588d5 | + | Mackinnon et al., Curr Biol. 12, 787-97 (2002). | |||||||||
| F07A5.7 | unc-15 | M | + | 314a12 | + | Ardizzi et al., J Cell Biol 105, 2763-70 (1987). | |||||||||
| F30H5.1 | unc-45 | M, P | + | 44f2 | + | Ao et al., J Cell Biol 148, 375-384 (2000). | |||||||||
| T21C12.1 | unc-49 | M | + | "264e5" | + | Bamber et al., J Neurosci 19, 5348-59 (1999). | |||||||||
| ZC101.2 | unc-52 | M, P | + | "554e12" | + | Rogalski et al., Genetics 139, 159-69 (1995). | |||||||||
| F11C3.3 | unc-54 | M | + | 577h6 | + | Ardizzi et al., J Cell Biol 105, 2763-70 (1987). | |||||||||
| C38C3.5 | unc-60 | M | + | na | na | Ono et al., J Biol Chem 273, 3778-83 (1998). | |||||||||
| F08B6.4 | unc-87 | M, P | + | na | na | Goetinck et al., J Cell Biol 127, 79-93 (1994). | |||||||||
| C09D1.1 | unc-89 | M, P | + | na | na | Benian et al., J Cell Biol 132, 835-48 (1996). | |||||||||
| (a) The initial positive control list was made from reports in the literature of genes that are primarily expressed in non-pharyngeal muscle (M). | |||||||||||||||
| The other cells in which the gene are reportedly expressed include the spermatheca (ST), pharynx (P), and somatic gonad (SG). | |||||||||||||||
| (b) If the gene was present in the list of 1364 "muscle-expressed" genes, it was given a "+" score. | |||||||||||||||
| (c) The clone in YKDB from which a RNA in situ expression pattern was retrospectively analyzed. | |||||||||||||||
| For technical reasons, those clones with the letter "e" are surrounded by quotation marks by us. | |||||||||||||||
| Those genes that were examined, but no expression data could be found do not have a clone name. | |||||||||||||||
| (d) If the YKDB expression pattern was consistent with muscle expression, then the gene was given a "+" score. | |||||||||||||||