S-Table 2. A comparison of the genes identified as expressed in L1 muscle to muscle positive controls.
YKDB
Expression In 1364 YKDB Expression
Gene Name Pattern (a) List? (b) Clone (c)  Pattern (d) Reference
M03F4.2 act-4 M, ST + 124f5 + Stone, et al., Gene 131, 167-73 (1993).
F40E10.3 csq-1 M, P + 170c12 + Cho et al., J Cell Sci 113, 3947-3958 (2000).
T01D1.2 etr-1 M - 465f3 - Milne et al., Curr Biol. 9, 1243-6 (1999).
B0304.1 hlh-1 M - 174f12 - Krausse et al., Dev Biol. 166, 133-48 (1994).
C36E6.F mlc-1 M + 304b5 + Rushforth et al., Genetics 150, 1067-77 (1998).
C36E6.B mlc-2 M + na na Rushforth et al., Genetics 150, 1067-77 (1998).
K12F2.1 myo-3 M + "589e9" + Okkema et al., Genetics 135, 385-404  (1993).
C44B12.2 ost-1 M, P, SG + 327f9 + Fitzgerald et al., Curr Biol 8, 1285-8 (1998).
F54C1.7 pat-10 M + 597f2 + Terami et al., J Cell Biol 146, 193-202 (1999).
C29F9.7 pat-4 M, SG, ST + 588d5 + Mackinnon et al., Curr Biol. 12, 787-97 (2002).
F07A5.7 unc-15 M + 314a12 + Ardizzi et al., J Cell Biol 105, 2763-70 (1987).
F30H5.1 unc-45 M, P + 44f2 + Ao et al., J Cell Biol  148, 375-384 (2000).
T21C12.1 unc-49 M + "264e5" + Bamber et al., J Neurosci 19,  5348-59 (1999).
ZC101.2 unc-52 M, P + "554e12" + Rogalski et al., Genetics 139, 159-69 (1995).
F11C3.3 unc-54 M + 577h6 + Ardizzi et al., J Cell Biol 105, 2763-70 (1987).
C38C3.5 unc-60 M + na na Ono et al., J Biol Chem 273, 3778-83 (1998).
F08B6.4 unc-87 M, P + na na Goetinck et al., J Cell Biol 127, 79-93 (1994).
C09D1.1 unc-89 M, P + na na Benian et al., J Cell Biol 132, 835-48 (1996).
(a) The initial positive control list was made from reports in the literature of genes that are primarily expressed in non-pharyngeal muscle (M).
The other cells in which the gene are reportedly expressed include the spermatheca (ST), pharynx (P), and somatic gonad (SG).
(b) If the gene was present in the list of 1364 "muscle-expressed" genes, it was given a "+" score.
(c) The clone in YKDB from which a RNA in situ expression pattern was retrospectively analyzed.
For technical reasons, those clones with the letter "e" are surrounded by quotation marks by us.
Those genes that were examined, but no expression data could be found do not have a clone name.
(d) If the YKDB expression pattern was consistent with muscle expression, then the gene was given a "+" score.