                                                                        Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:175 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G=-12.00 kcal/mol
Antiterminator: Size=79 nt.     Delta G= -7.32 kcal/mol
Anti-antiterminator:   Size=57 nt.     Delta G= -8.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CCAATGCCATGCTTGAAGTGGCTGAAAAAGGCATTCAGGAACTCATTAAGAAACAACA
GCAAGCATTGGGCTGGTAAggttcttttaaaatcaaaacgcatctttggatgcgtttttttatttttatagtgactggacaaataa
ttattgtagaaatattagcatctctaatactattataaataaatctaatactattataaataaaaagcctattaactgaatgtaatgattagatctatat
tttttaccaaacttcaaaagtttgttatgattgatgtttaaacaataaaatgagatATG

    ACIAD0051 --- ACIAD0052 --- ACIAD0053 --- ACIAD0054 Gene: ACIAD0051     GI: 50083345     BI number: ACIAD0051     GOG: -------     Description: hypothetical protein Gene: ACIAD0052     GI: 50083346     BI number: ACIAD0052     GOG: -------     Description: hypothetical protein; putative bacteriophage Gene: ACIAD0053     GI: 50083347     BI number: ACIAD0053     GOG: -------     Description: hypothetical protein; putative zinc protease Gene: ACIAD0054     GI: 50083348     BI number: ACIAD0054     GOG: -------     Description: hypothetical protein; putative fragment of ribosomal protein S             A           C  T           G  T           A  G           A  G            CG            GC            AT            CG           |  G           |  T   G       A  A A  G      A  A A  C      C  g A  A      A  g AT        At AT        At GC        Gc TA        At CG        At G  G      T  t G  A      T  t TA       A  a GC       C  a AT       T  a |  C      C  a |  A      A  | AT        At GT        Gc TA       G  a TA       A  a CG       C  a       tt |  A      T  a      t  g |  A      T  c       cg |  A      A  |       ta |  C       Cg        at G  A       Gc        cg T  A      |  a       gc A  C      |  t       cg C  A       Gc        at CG        At        at GC        At        at TA        At        at                         tttatttttatagtgactggacaaataattattgtagaaatattagcatctctaatactattataaataaatctaatactattataaataaaaagcctattaactgaatgtaatgattagatctatattttttaccaaacttcaaaagtttgttatgattgatgtttaaacaataaaatgagatATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:182 nt.     Distance to run of Ts=0 nt.   Size=20 nt.     Delta G=-10.20 kcal/mol Antiterminator: Size=79 nt.     Delta G= -7.32 kcal/mol Anti-antiterminator:   Size=48 nt.     Delta G= -6.90 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case CCAATGCCATGCTTGAAGTGGCTGAAAAAGGCATTCAGGAACTCATTAAGAAACAACA GCAAGCATTGGGCTGGTAAggttcttttaaaatcaaaacgcatctttggatgcgtttttttatttttatagtgactggacaaataa ttattgtagaaatattagcatctctaatactattataaataaatctaatactattataaataaaaagcctattaactgaatgtaatgattagatctatat tttttaccaaacttcaaaagtttgttatgattgatgtttaaacaataaaatgagatATG     ACIAD0051 --- ACIAD0052 --- ACIAD0053 --- ACIAD0054 Gene: ACIAD0051     GI: 50083345     BI number: ACIAD0051     GOG: -------     Description: hypothetical protein Gene: ACIAD0052     GI: 50083346     BI number: ACIAD0052     GOG: -------     Description: hypothetical protein; putative bacteriophage Gene: ACIAD0053     GI: 50083347     BI number: ACIAD0053     GOG: -------     Description: hypothetical protein; putative zinc protease Gene: ACIAD0054     GI: 50083348     BI number: ACIAD0054     GOG: -------     Description: hypothetical protein; putative fragment of ribosomal protein S             a           a  a           a  c           c  g           t  c            aa            at            ac            at           |  t           |  t           t  g           t           t   A       t C  T       c G  T       t A  G       t A  G       g CG        g GC       A AT       A CG       T A  G      G A  |      G C  |      T A  |      C  | A  |       G A  |       G G  |      G A  |      T AT       T   TA       A   TA       C         tt A  |      G  |      t  g C  |       A        cg Tg        A        ta Cg       |         at At       |         cg At        C        gc Gc        G        cg Gt        A        at At        C        at                         tttttatttttatagtgactggacaaataattattgtagaaatattagcatctctaatactattataaataaatctaatactattataaataaaaagcctattaactgaatgtaatgattagatctatattttttaccaaacttcaaaagtttgttatgattgatgtttaaacaataaaatgagatATG     ..................................................................................................................