Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:165 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-12.10 kcal/mol
Antiterminator: Size=27 nt. Delta G= -5.30 kcal/mol
Anti-antiterminator: Size=70 nt. Delta G= -7.79 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TATTAATCGATAAGAATTATAATTTAACTTATATGGAAGGTAATAAAGAAAAGCGAAT
ACAGTTGAAATAAtagttgtattcatattttgataagtgattgaaatcaatccgaacttaaaaaagttcggattttttacaaatataaaaa
ctaaggagaaatgtttacataggcactgatttagttgatattgcataatggggcgggattaactatgtctaaaaaatattatcaattggtattattttga
tcaagttaaggctgagcaaaatgtgaaaatttaagttgataacttataaatGTG
ACIAD0171
Gene: ACIAD0171 GI: 50083455 BI number: ACIAD0171 GOG: ------- Description: hypothetical protei
AT
A A
A A
Gt
Ta
T g
G t
At
Cg
At
Ta
At
At
Gc
C a
G t
A a
At
At
At
Gt
A g
A |
A |
T |
A |
A |
T | aa
G | a t
G | gc
A | ta aa
A | ta a a
G | at ta
G | gc ta
T | | c cg
A | | g at
Ta | a at
At ta gc
Ta gc cg
Ta at cg
Cg at ta
At ta at
tttttacaaatataaaaactaaggagaaatgtttacataggcactgatttagttgatattgcataatggggcgggattaactatgtctaaaaaatattatcaattggtattattttgatcaagttaaggctgagcaaaatgtgaaaatttaagttgataacttataaatGTG
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