Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:41 nt. Distance to run of Ts=1 nt. Size=25 nt. Delta G= -6.60 kcal/mol
Antiterminator: Size=78 nt. Delta G=-16.22 kcal/mol
Anti-antiterminator: Size=80 nt. Delta G=-22.86 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCGATTACCAAACACCGTGCCAAACGTGATAAACGTCGTGCCGGCTCGGTTTTAGAAG
TAATTCCAGGATTAGGGCCTAAGCGTCGTCGTGACTTATTGACTCATTTTGGTGGTAT
CCAGGGTGTACTCAAAGCTTCGGAAAAGGAGCTGATGCTGGTTTCTGGTCTGGGGCCT
TCTATGGCAAGAACCATTTATAAAATCTTGCATGAATAAattggcaaaaacatcctgtgactggcgcgtca
ctgatcatttttgttgtcataaaatactgcacaatagcaatcagaatgaaaaataATG
ACIAD0341
Gene: ACIAD0341 GI: 50083606 BI number: ACIAD0341 GOG: ------- Description: putative acyl-CoA thioesterase I
T
T A
T T
TG A A
A C C A
G T C A
TG A A
CG AT
GT GC
AT AT
GT AT
GC CG
AT GC
A G | A
A G | T
AT | G
GC G A
GT TA
CG AT
TG TA
TG | A
CG C a
GC T t
| C T t
A T Cg
A T Cg
A C Gc
C T | a
T A | a
C T | a
A G | a
TG | a
GC | c
TA | a gc
G A | t g g
G | Gc t c
G | Gc cg
A | Gt at
C | Tg gc
CG | t ta
TA Cg gc
A | Ta t t
TA Gc c |
GC Gt cg
GC Tg ta
TA Cg at
catttttgttgtcataaaatactgcacaatagcaatcagaatgaaaaataATG
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