Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance from promoter:138 nt. Distance to gene:39 nt. Distance to run of Ts=0 nt. Size=22 nt. Delta G= -6.80 kcal/mol
Antiterminator: Distance from promoter:109 nt. Size=35 nt. Delta G= -5.40 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGTTT-TATATT. It has a score value of 64.26 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGTTTTTTCAAGAGACTGTTTATATTGCAATGTCAGGTTTTGGTCAGCAGAAGCACA
GAGCATTTTCGTGGTCGCAACTGCTCCAAAATTGAGCTGATCAGAGCTCAGTTGATAA
CTGCCCATAATACGATTACAACCATCAGAACCACTAAAACGTTTTGTTGCTTGGTCTA
GCTGAAGGCTGGGTTTATTCGTTGCTTTTGGATCAACCTGAAAACCATTAATTTCACT
G
ACIAD0512
Gene: ACIAD0512 GI: 50083750 BI number: ACIAD0512 GOG: ------- Description: hypothetical protei
A
T A
C A
A A
C C
CG
AT
AT
GT
AT CT
CG G G
| T A A
| T TA
| G CG
| C TG
T T GC
AT G T
CG T G
CG TG
AT CG
TTTATTCGTTGCTTTTGGATCAACCTGAAAACCATTAATTTCACTG
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