Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:117 nt. Distance to run of Ts=0 nt. Size=20 nt. Delta G=-14.60 kcal/mol
Antiterminator: Size=64 nt. Delta G=-11.44 kcal/mol
Anti-antiterminator: Size=60 nt. Delta G= -7.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CTAGGTATGGAAGCTATCTACAAATTTGTAGTCGAAGACATGCCAGTATCCGTTGCAG
TTGATGTTAACGGTACATCGGTACATGCAATTGCACCCAAAATCTGGCAAGAAAAGAT
TGGTAAAATTCCAGTGATTGATGCCACTGCAGTTTAAgcgataaaagcgcctacgggcgcttttttttgccca
aaagtgttaatgtgcacaaacaccacaaaaacacaaaagtaaatcccactcaatccagtagaataagtccgaataattcacaacaacattaatggttaca
gaggctttaccATG
ACIAD0537
Gene: ACIAD0537 GI: 50083775 BI number: ACIAD0537 GOG: ------- Description: conserved hypothetical protein; putative signal peptid
GA
A T T
A G T G
C A A C
G A GC
G A TA
TA GC
CG AT
TA CG
AT C C
AT TA
A | TG
A | AT
C | AT
CG AT
CG A A
AT T A
C A G g
G A Gc
TA Tg
TA Ta
AT At
AT G a
C C A a ac
GC A a t g
TA A a cg
A G A g cg
C T G c gc
A G A | cg
TA A | gc
GT Cg at
GT Gc at
CG Gc at
tttttgcccaaaagtgttaatgtgcacaaacaccacaaaaacacaaaagtaaatcccactcaatccagtagaataagtccgaataattcacaacaacattaatggttacagaggctttaccATG
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