Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:75 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G=-15.70 kcal/mol
Antiterminator: Size=75 nt. Delta G=-15.00 kcal/mol
Anti-antiterminator: Size=59 nt. Delta G= -7.97 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TGCTGAATATGGGCTTGGCGTATGATGGGCAAATCAATGCCAAAGCAGGTTACCAGCT
TTATGCCAAGGCCAATAATTTGCTCGACAGTAAAGTGTACCTACACGAGTCATTTTTA
TCGGATGTTCCACAGATCGGACGTAATTTTACCATGGGTGTAAACTTTAATTTCTAAt
gagattaagttggaaactatgcaggaaagcttcggctttcctttggtttttataggtcataaaagtcagaattaacgaaatcaatcttgaaaaataagca
gataatctttagcctgaacccagttaTTG
ACIAD0613
Gene: ACIAD0613 GI: 50083848 BI number: ACIAD0613 GOG: ------- Description: conserved hypothetical protein; putative phospholipase D endonuclease domai
AA
T t
Cg
Ta
Tg
Ta
At
At
T |
AG Ta
C A Ta
A T Cg
C C At
CG At
TG A g
TA T g
GC G a
TG T a
AT G a
G A Gc
G A Gt
C T Ta
T T At
A T Cg tc
T T | c t g
T A C a cg
T C A g gc
T C Tg at
TA Ta at
AT Ta at
CG Ta gc
TG A | gc
G | A | at
A | Tg c t
G | Gc g |
CG C | t |
AT At at
CG Gt tg
AT Gc cg
TA Cg at
ttttataggtcataaaagtcagaattaacgaaatcaatcttgaaaaataagcagataatctttagcctgaacccagttaTTG
..................................................................................................................