Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:101 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-12.60 kcal/mol
Antiterminator: Size=74 nt. Delta G=-11.13 kcal/mol
Anti-antiterminator: Size=44 nt. Delta G= -5.22 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATGGTTTAACTGGTGCAGTGACGCATCATGAAGTTGAAGAACAACCAATTGTCTCATC
AGATCATATAGTGCCGCCTTCTAGTCGGAATGCACCTTGTCCATGTGGTTCTGGACTA
AAATATAAGCAATGTCATGGCCGTCTCTAAttcctaggatgctataactgaaaaaagcagaacgtaaatgttctgctt
tttttatgacttttttacgagttgttgcaaggtgcgaataacatttgcagtttagtgcattaagtggtatttacttgcacatgttgacttcaattttggt
aagacaATG
ACIAD0649
Gene: ACIAD0649 GI: 50083881 BI number: ACIAD0649 GOG: ------- Description: hypothetical protein; putative signal peptid
t
t c
A c
At
Ta
Cg
T |
Cg
Ta
Gt
C |
Cg
Gc
Gt
Ta
At
C a
Ta
Gc
T t
A A g
A A A a
T A C a
C T G a
A A A a
G T A a
G A T a
TA A g
CG T |
| C A |
TA A | aa
TA A | t a
GT A | gt
G G T | cg
T T C | at
GC A | at
TA G | gc
AT Gc at
CG Ta cg
CG Cg gc
T C Ta at
GC Ta at
TG Gc at
ttttatgacttttttacgagttgttgcaaggtgcgaataacatttgcagtttagtgcattaagtggtatttacttgcacatgttgacttcaattttggtaagacaATG
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