Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:205 nt. Distance to run of Ts=0 nt. Size=22 nt. Delta G=-11.20 kcal/mol
Antiterminator: Size=53 nt. Delta G= -8.91 kcal/mol
Anti-antiterminator: Size=23 nt. Delta G= -3.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aacttctgaataattaactttattaaaaaatcatgattgaatgttaatggtgacgtatctttcttcaaaagctcttcatgattggggagcttttttacaa
agtttgagtacagtgatacgccgtgtatcaaaatgctgtgatttatcttaatttatgcatttacattcttttgaaagtacttaatatgaactagatcaag
caacacttatacttatcaaaggaatgcaatgagtataaaaacaggatatccagagatgaaaaaacacctcctcgcaatacttctctccctttctgcaagc
ATG
ACIAD0711
Gene: ACIAD0711 GI: 50083934 BI number: ACIAD0711 GOG: ------- Description: hypothetical protein; putative signal peptid
tg
g a
gc
tg
at
| a
| t
a c
t t
t t
g t
t c
at
at
gc
ta
ta
| a
| a
t | g
a g | c ga
at | t t t
gt | c at
ta | t cg
ta at tg
at gc tg
g g ta cg
tg at ta
at cg cg
cg ta gc
ta at at
tttttacaaagtttgagtacagtgatacgccgtgtatcaaaatgctgtgatttatcttaatttatgcatttacattcttttgaaagtacttaatatgaactagatcaagcaacacttatacttatcaaaggaatgcaatgagtataaaaacaggatatccagagatgaaaaaacacctcctcgcaatacttctctccctttctgcaagcATG
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