Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:84 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-14.10 kcal/mol
Antiterminator: Size=71 nt. Delta G= -6.60 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G= -5.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ACAGAGCGTATGGTCGAAAAGCCAATGGCTGCACGCCGTGGTGGATACTTGAGACAGC
AGCGCCGTGACAATGAAAATGGCACTGAAAATAATAACGAAACCAAACAACCTTATGC
TGCTGCGCGAAAGACTGTGGCGGTAAATAAAGGATTTAAGAAGTTCTGAtcaattcattatgta
acctaaaaagagttcacttttgtgaactcttttttattaaattgtttttttgagaaatagtttacatatatacaagtctgtatataatttaatggctata
aatcaacaataattaggttcATG
ACIAD0860
Gene: ACIAD0860 GI: 50084072 BI number: ACIAD0860 GOG: ------- Description: hypothetical protein; putative signal peptid
a
a a
t a
ca
cg
| a
| g
a t
a t
tc
ga
tc
at
G tt
A T t t
A T at
GC c
AT t
| G t
| A |
A t a
T c a
Ta c
Ta t
At A
Gt G tt
Gc T t t
A a C cg
At T at
At T cg
Ta G ta
At A ta
| g A gc
A t G at
A a A | gc
Ta A at
Gc T at
Gc T at
tttattaaattgtttttttgagaaatagtttacatatatacaagtctgtatataatttaatggctataaatcaacaataattaggttcATG
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