Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance from promoter:46 nt. Distance to gene:175 nt. Distance to run of Ts=0 nt. Size=20 nt. Delta G= -6.30 kcal/mol
Antiterminator: Distance from promoter:17 nt. Size=39 nt. Delta G= -3.70 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGAAG-TATAAT. It has a score value of 78.31 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGAAGTCTAATCTCAGATTAGTTGTATATAATATTTATGAAGTAATGGCATTGTCTC
CAAAATTATTTATTTTTAATAAGGATATAGTTTTATATCCTTTATTTCCGACATATAT
AATTAGAGTGGGCACACTTATTTAAaaatgaattttttataaagctggaatagattattttgaaaaaaattgattaaattaa
cagaattactaggaaaatccttctctaggggaactttgataagatttccctcataatatccctttgaaaatgaggtcattATG
ACIAD0951
Gene: ACIAD0951 GI: 50084157 BI number: ACIAD0951 GOG: ------- Description: hypothetical protei
AT
T T
T T
T T
AT
TA
TA
AT
A A
A A
A | TT
CG G T
CG AT
TA TA
C T AT
TA TA
GT AT
TA GC
TG GC
AT AT
TTATTTCCGACATATATAATTAGAGTGGGCACACTTATTTAAaaatgaattttttataaagctggaatagattattttgaaaaaaattgattaaattaacagaattactaggaaaatccttctctaggggaactttgataagatttccctcataatatccctttgaaaatgaggtcattATG
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