Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:37 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G= -7.90 kcal/mol
Antiterminator: Size=43 nt. Delta G= -4.20 kcal/mol
Anti-antiterminator: Size=58 nt. Delta G= -3.52 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATAAACACACAATCCGTCGTGCAGGCTGATTCAACTGAACGGTATTTCCATCACGATC
TGTTACGCTGATTGAAGAATGCAGTTGTGAATGTACATGATCTTGTGCTGGAGAACAT
CCCGTTTGAATCACTAAGCATAACGTGGTCATTATCAGATAAAAAATATTGGGGCAAT
AACTCAACACataatctcacgccatagaaaactaagaagaccagtaagtcaattaacttatacaatcttgtgtacaagatggtattttattgt
aatttaccacaattgcaacattcggtttttttcATG
ACIAD0973
Gene: ACIAD0973 GI: 50084177 BI number: ACIAD0973 GOG: ------- Description: putative ferrichrome-iron receptor protei
A
C C
A a
A t
C a
T a
C t
A c
A t
T c
A a
A c
Cg
Gc
Gc
| a at
| t a t
| a c a
| g ta
| a gc
| a at
| a at
| a ta
| c gt
| t a a
| a c c gt
| a c a t a
| g a a gc
| a g | ta
| a a | ta
| g at cg
| a gc ta
Gc at at
Gc at a g
Ta tg cg
Tg | t at
At cg ta
Ta at at
tttattgtaatttaccacaattgcaacattcggtttttttcATG
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