Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:75 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-11.90 kcal/mol
Antiterminator: Size=66 nt. Delta G= -8.81 kcal/mol
Anti-antiterminator: Size=53 nt. Delta G= -7.39 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CAGCTCCCCTGTTTCCAATTTTACCCATTTTAGGCTTCTTGTTTTGTTTGATTACTGG
ACTAAGTATGGCGAAAGATCCAGAAATGTTGCCTGGTTTTATTGGATGCTTAATTTTT
GTAGCGTGTTGCTATTTGAGCCACTACATATTTTATCGGGAAAAAAGCAAGCTGTGAt
agatacacacaagaacctcggaaaagtgtagcaaaatcgctacacttttctttgaataacactggtttaaatgccgaatcacctgtaaattttgaattaa
cataagaataaattattaagatcacgATG
ACIAD1145
Gene: ACIAD1145 GI: 50084339 BI number: ACIAD1145 GOG: ------- Description: hypothetical protei
g
a a
t t
A a
Gc
Ta
Gc
Ta
AT C c
T T G a
A T A a
C T A g
A A C a
T T G a
C C A c
A G A |
CG A |
CG A |
G A A |
A | A |
G | Gc
TA Gt
TA Gc
TA Cg
A A Tg
TA A | aa
CG Ta a t
GC Ta a c
TA Ta cg
TA Ta gc
G | A | at
T | Tg ta
G | At gc
CG Cg ta
GC At gc
AT Ta at
TG Cg at
ttctttgaataacactggtttaaatgccgaatcacctgtaaattttgaattaacataagaataaattattaagatcacgATG
..................................................................................................................