                                                                        Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:182 nt.     Distance to run of Ts=0 nt.   Size=36 nt.     Delta G=-13.80 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -3.90 kcal/mol
Anti-antiterminator:   Size=38 nt.     Delta G= -4.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGCCAGGCGCAACTCTATTAACCTGTTCAGAGTTTGGGCAAGCCATCATTAAGCATAT
GGATGATTAActgacataatatgatcaaacctctcatatcgggaggtttttatcattttttaaatataagtaattgaattaaaattatataaa
taaaatagtcacttatagttaaatgacgccaagctgctacatcatattaaatcgtgcaacttcataaaaaactagcttgaactattctagctgtgatcaa
atagttgaagtttcaaaaaaatcgtaaatttaaaattaggagtggagggATG

    ACIAD1191 Gene: ACIAD1191     GI: 50084380     BI number: ACIAD1191     GOG: COG1823     Description: putative transport protei            ca           a  t AA       g  a C  G      t  a GC       c  t GC       A  a        a |  A       At       t  t |  T       Tg       a  c |  C       Ta        cg |  A       At        tg |  T       Gc        cg GT        Ta        ta TA       |  a       cg TA       |  a       cg TG       |  c       at GC       |  c       at |  A       At        at A  T       Gc       |  t G  A      |  t      c  t AT        Gc        ta CG        Ta        at TG        At        gc TA        Ta        ta GT        At        at                         tttttaaatataagtaattgaattaaaattatataaataaaatagtcacttatagttaaatgacgccaagctgctacatcatattaaatcgtgcaacttcataaaaaactagcttgaactattctagctgtgatcaaatagttgaagtttcaaaaaaatcgtaaatttaaaattaggagtggagggATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG1823 Predicted Na+/dicarboxylate symporter ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:191 nt.     Distance to run of Ts=0 nt.   Size=19 nt.     Delta G= -9.00 kcal/mol Antiterminator: Size=43 nt.     Delta G= -3.90 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case TGCCAGGCGCAACTCTATTAACCTGTTCAGAGTTTGGGCAAGCCATCATTAAGCATAT GGATGATTAActgacataatatgatcaaacctctcatatcgggaggtttttatcattttttaaatataagtaattgaattaaaattatataaa taaaatagtcacttatagttaaatgacgccaagctgctacatcatattaaatcgtgcaacttcataaaaaactagcttgaactattctagctgtgatcaa atagttgaagtttcaaaaaaatcgtaaatttaaaattaggagtggagggATG     ACIAD1191 Gene: ACIAD1191     GI: 50084380     BI number: ACIAD1191     GOG: COG1823     Description: putative transport protei TA T  A A  c G  t T  g A  a Gc Ga Tt Aa Ta At |  a |  t |  g        a |  a      t  t Ct       a  c Gc        cg |  a       tg Aa        cg Aa        ta Tc        cg Tc        cg At        at             ttttatcattttttaaatataagtaattgaattaaaattatataaataaaatagtcacttatagttaaatgacgccaagctgctacatcatattaaatcgtgcaacttcataaaaaactagcttgaactattctagctgtgatcaaatagttgaagtttcaaaaaaatcgtaaatttaaaattaggagtggagggATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG1823 Predicted Na+/dicarboxylate symporter ... can be seen here     ..................................................................................................................