Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:27 nt. Distance to run of Ts=0 nt. Size=16 nt. Delta G= -9.30 kcal/mol
Antiterminator: Size=63 nt. Delta G= -4.20 kcal/mol
Anti-antiterminator: Size=38 nt. Delta G= -4.74 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CAGGCGTAGGAACTGCTAGCGATGCTGCAATCGCAATGGAACTCGGCTGCGATGGCGT
GCTGATGAATACAGCAATTGCAGCAGCTCAACATCCAGTTTTGATGGCATCTGCCATG
AAAAAAGCGATTGAAGCAGGCCGAGAAGCCTTTTTAGCGGGTCGTATGCCACGCAAAC
GAATGGCGAATGCCAGCTCTCCAGAAACAGGCTATTTCTTTAAATAAcgcatactattattatat
tgaaaagtttcaaaggattcttcggaatcctttttcataaaaacaatgagagcaagcgcaaATG
ACIAD1306
Gene: ACIAD1306 GI: 50084489 BI number: ACIAD1306 GOG: ------- Description: conserved hypothetical protein; putative signal peptid
t
a a
c c
g t
c a
At
At
Ta
At
At
| a
At
Ta
T t
T t
CC Cg
G A Ta
T G Ta
A C Ta
AT A |
GC Ta
C T Cg
GC Gt
GC Gt
TA At
A G C c
A A A a tc
G A A a t g
C A A a cg
A C G | ta
A A A | ta
A G Cg at
CG Cg gc
GC Ta gc
tttttcataaaaacaatgagagcaagcgcaaATG
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