Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance from promoter:94 nt. Distance to gene:32 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G=-15.80 kcal/mol
Antiterminator: Distance from promoter:82 nt. Size=28 nt. Delta G= -5.00 kcal/mol
Anti-antiterminator: Distance from promoter:38 nt. Size=58 nt. Delta G= -9.20 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGAAA-AACGAT. It has a score value of 60.91 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGAAAACCTTGAGAAGAAGCGCAACGATACTGCCAAAAATGCAGCGGATAGTTATAT
TGATGTGAATATCGATGCTGCTTCTGTGGATTTGACTGGAATTCGAGAGCTATAAgatt
tgttgatgaaaaagcgggtttttcccgcttttttattttatgattggacaaaacaatatcactaggattgtTTG
ACIAD1324
Gene: ACIAD1324 GI: 50084506 BI number: ACIAD1324 GOG: ------- Description: hypothetical protein; putative membrane protei
C
A T
G G
TG
TA
TA
AT
GT
GC
TG
G A
T |
C |
TG
TA
CG
GC
| T
| A
| T t
| A ga t t
TA t a t t
Cg a a gc
| a g a gc
| t ta gc
| t tg cg
G t gc gc
Tg tg at
At tg at
Gt tg at
Cg at at
Ta gt at
At At gt
Tg At ta
ttttatgattggacaaaacaatatcactaggattgtTTG
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