Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:148 nt. Distance to run of Ts=0 nt. Size=23 nt. Delta G= -6.80 kcal/mol
Antiterminator: Size=44 nt. Delta G= -3.95 kcal/mol
Anti-antiterminator: Size=53 nt. Delta G= -6.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCAAAATTATTTTTAATGATGCGGCATTGCAACATGTACGGGTTAATGCTGTGTTGCC
TTTAGACCAAACCACAGAATCACTTAAGCTTTTGGCTACGGTTTTTCCAGACCTGAAA
ATTAAGCAAATCATGCCGTTTGTGGTCATGGTTTCTTTAAAATAAtaaaaaattaaatttattttca
attttaggttccacttttttgaaagtcgttcgtcatagtaagtagaagcaataaatatggatcattttaatcagttgtattgaatgattcttattacgat
ttactggggcggggcaaATG
ACIAD1472
Gene: ACIAD1472 GI: 50084645 BI number: ACIAD1472 GOG: ------- Description: putative receptor protei
TC
T C
G T A
A A TG
C A TA
A T GC
C C GC
C A | T
A C | G
A T | A
A T | A
C A | A
C A | A
A G | T
GC | T
AT | A
T T | A
T T | G
T T | C TT
CG | A T G
CG | A GT
GC | A CG
T | | T CG
T | C C | T
GT A A GC
TA T T TA
GC CG AT
TG GC CG
CG GC TG
GT TG AT
TTCTTTAAAATAAtaaaaaattaaatttattttcaattttaggttccacttttttgaaagtcgttcgtcatagtaagtagaagcaataaatatggatcattttaatcagttgtattgaatgattcttattacgatttactggggcggggcaaATG
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