Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance from promoter:93 nt. Distance to gene:94 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-12.80 kcal/mol
Antiterminator: Distance from promoter:45 nt. Size=61 nt. Delta G= -5.20 kcal/mol
Anti-antiterminator: Distance from promoter:18 nt. Size=45 nt. Delta G= -9.60 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGAAC-AAAAAT. It has a score value of 65.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGAACTGAATGCTGACCTATCACAAAAATGGCCAAATATCACACAAATTGGTGACCA
ACCTGCTGATCGAGAAGAATGGAATGGTAAACCAGATAAACTTCAGTATTTAGAGAAG
TAAtttaaaagatcagcattagctgatctttttttatactttaaatcaacatttgattgcaaaattttcaaaatttgttcttcattttgcactaaaat
aacgagcttagaataagttgttgattttattATG
ACIAD1496
Gene: ACIAD1496 GI: 50084666 BI number: ACIAD1496 GOG: ------- Description: hypothetical protei
TT
A T
T A
G G
A A
CG
TA
TA
CG CG
T A AT
A G A A
G A A |
TA TA
CG At
| A Gt
G A At
T T C a
CG C a
CG A a
| A A a
A A A g tt
AT Ta a a
CG Gt cg
CG Gc gc
AT Ta at
| A A g cg
G A A | ta
TA G | at
GC Gc gc
GC Ta at
TA At at
TG At at
ttttatactttaaatcaacatttgattgcaaaattttcaaaatttgttcttcattttgcactaaaataacgagcttagaataagttgttgattttattATG
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