Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:86 nt. Distance to run of Ts=1 nt. Size=31 nt. Delta G=-15.30 kcal/mol
Antiterminator: Size=37 nt. Delta G= -6.20 kcal/mol
Anti-antiterminator: Size=60 nt. Delta G= -6.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTTGGTCGGCCCGATTCCTGCACCTTACCAAAAAGTCACGGTATTTGCTGCTGGCATT
GGTAAACACTCTGAACATGCAAAAGCAGCAAAAGAACTGATTCAATTTGTAAAATCGC
CTCAAGCGACACAAACGATTGAAGAACAGGGTCTTGAGCAGGTTAAACAATAAaagctcta
aaaggcagcattttgagaggatgttgcctttattctttcggcggtttacgcagcataatagaacaaaatgcacagcgataaacccgtgtagaataataaa
caaaggacaatgtagtatttgccGTG
ACIAD1539
Gene: ACIAD1539 GI: 50084704 BI number: ACIAD1539 GOG: ------- Description: putative transcriptional regulator (LysR family
G
A A
A A
GC
TA
TG
A G
G |
CG
AT
A |
A |
C |
A |
C | C
A | A A
G | A A
C | AT
GC TA
AT TA a
AT G a g g
CG G a t a
TA A | tg
CG Cg tg
C C Gc ta
G A At at
CG Gc cg
TG | t gt
AT | a at
AT | a cg
A A Ta gc
A A Ta gc
TA Cg at
GC Tg at
TA Gc at
attctttcggcggtttacgcagcataatagaacaaaatgcacagcgataaacccgtgtagaataataaacaaaggacaatgtagtatttgccGTG
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