Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1
Characteristics of the secondary structures
Terminator: Distance to gene:95 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G=-10.30 kcal/mol
Antiterminator: Size=45 nt. Delta G= -4.04 kcal/mol
Anti-antiterminator: Size=61 nt. Delta G=-14.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ACGCGTAAGGCAGCCAATCCTAAACTGGCTCTGAACCTGAATGCAGATGAGACGGTTC
CTTATGGTACGGTTGCCAAGTTACTGGCCAGCATAGAACGGGTAGGCGTTGATAAACT
ATCAGTCATTACGTCGCCTAAGTCTTAAgttctatcaaaataaacaagacgaaagaaaatcaagatccaaatttgagat
cttgatttttatataattgtttaatctaaatttatattaaacttgaatttcacgattaggttgtatggtctattttagagcttcaatttgatggtgagat
ggcgaATG
ACIAD1591
Gene: ACIAD1591 GI: 50084753 BI number: ACIAD1591 GOG: ------- Description: putative transcriptional regulato
T
C A
A T
A C
A A
TG
AT
GC
TA
| T
| T
TA
GC
CG
GT aa
GC a c
A | t a
TG a a
GC a g
GC a a
GT a c
| A cg
| A ta
| G a a at
| T ta a t
| C cg at
| T ta cg
| T ta | a
| A | a cg
| A g a ta
Cg A t at
At A c gc
At Ta at
Gc Ta at
At Cg cg
Ta Ta ta
At Gt at
ttttatataattgtttaatctaaatttatattaaacttgaatttcacgattaggttgtatggtctattttagagcttcaatttgatggtgagatggcgaATG
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