                                                                        Gene putatively regulated by attenuation in Acinetobacter_sp_ADP1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:134 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G= -9.31 kcal/mol
Antiterminator: Size=27 nt.     Delta G= -3.60 kcal/mol
Anti-antiterminator:   Size=42 nt.     Delta G= -9.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CATTTAGAATTGACCCAACAATGGCAATGGTCTGGAGAACATTATGAAAAAACGGCCA
ATGCATGGTTAAATAACATGGATACGCATGAAGCCCAGCTCAAGCCATTGTTTGAAAA
AATTTATGCAAAAGACGCTGATGCTTGGTGGCAACGCTGGCGTATTTTTTTCATGGCC
TGTGCAGAACTGTTTGGTTTGGAACAAGGACAGGAATGGGTCATTGGTCACTTCTTGT
TTAAAAAGAAAGTGATTATAAGTTAAattaaaatttaactgaaacagtaaggaagtattgattacgatATG

    ACIAD1633 Gene: ACIAD1633     GI: 50084791     BI number: ACIAD1633     GOG: -------     Description: putative two-component system sensor protein (ColS-like AT C  T CG GT AT                  CA AT                 G  A CG                  GC TA                  TG C  A       GA        GC G  A      T  T       GT A  A       CG       T  | C  A       GC       T  | C  A      C  |      C  | C  |       AT       G  | G  |       GT       T  | AT       A  G      A  | AT       A  G      G  | GT       A  T       TG TA       A  G       CG AT        CG        GC CG        GC        CG GC        TA        AT                         ATTTTTTTCATGGCCTGTGCAGAACTGTTTGGTTTGGAACAAGGACAGGAATGGGTCATTGGTCACTTCTTGTTTAAAAAGAAAGTGATTATAAGTTAAattaaaatttaactgaaacagtaaggaagtattgattacgatATG     ..................................................................................................................