                                                                        Gene putatively regulated by attenuation in A_pernix

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:175 nt.     Distance to run of Ts=0 nt.   Size=21 nt.     Delta G=-11.00 kcal/mol
Antiterminator: Size=47 nt.     Delta G=-11.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CCCACAAGCCCTTATGCTCATTATACGATACCCGTATTCCTTAGAGTCCCATGGGTTA
TCATTCTAACCTCCATAGCTTCATGGAGCCTGGTTGGGGTGTGCCTGGAATTACTGTC
CAGGCTTTTTAGCAAGTCAAGTTAGtaggtttataggggctattaggggtatcctgttcaagcaacagcgttctccaggatg
ccgtaaaaatgtgttaacactcaatgtgtaacattgtgtcttcctgtattggaccaaaatagcctaaaatagcttcatcttataatcagaataaccgtaa
taGTG

    APE0053 Gene: APE0053     GI: 14600410     BI number: APE0053     GOG: COG0179     Description: hypothetical protei AT C  G TG TA CG GC |  C |  T |  G A  G T  T AT CG CG TG CG |  T        A CG       T  C AT       T  T |  G      A  G |  C       AT |  C       GC AT        GC TG        TA CG        CG TA        CG TA        GC             TTTTTAGCAAGTCAAGTTAGtaggtttataggggctattaggggtatcctgttcaagcaacagcgttctccaggatgccgtaaaaatgtgttaacactcaatgtgtaacattgtgtcttcctgtattggaccaaaatagcctaaaatagcttcatcttataatcagaataaccgtaataGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) ... can be seen here     ..................................................................................................................