                                                                        Gene putatively regulated by attenuation in A_pernix

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:212 nt.     Distance to run of Ts=0 nt.   Size=37 nt.     Delta G= -9.30 kcal/mol
Antiterminator: Size=26 nt.     Delta G= -7.40 kcal/mol
Anti-antiterminator:   Size=47 nt.     Delta G= -9.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GGTATCTCGTCGAGGCTGGGGTAAGCCTTCTCACCCAGTATCTCGTCGGCGGAGGGGT
TAACCGGTATTATCCTGTATCCAGCCTTTTTGAGGTACTCGGGGACCCTGTATGCATC
CTTCTCAGGGTTCCTGCTGGCGCCGACCACAGCCACCACCCGGGCTGTCCTGAGGACC
TCGAACGGATCCCTTATAGAGCCCTTCACCGATAACCACCCACACAACATTTGGGGTG
GCCCCGGGTTTAAGTCCTCCAATATAAACATctatcttaaaccacgggccagtgaggttgcagagcgtATG

    APE1661 Gene: APE1661     GI: 14601543     BI number: APE1661     GOG: COG1990     Description: hypothetical protei   a g  g a  c cg gt |  A                  G |  T                C  G tG                 C  T tA                 A  A gC                 A  T gC                 T  T a  |       CG        TA gC       T  G       GT tA        GC        GC g  G       CG        GC a  T      T  |       GT c  A       CG       |  G c  T       TA       |  T gC       A  G      |  A gT       T  |       AT gC       G  |       GC cG       A  |       GC aT        CG       |  A |  C       CG        CG cG        CG        GC cG        AT        GC                         TTTTTGAGGTACTCGGGGACCCTGTATGCATCCTTCTCAGGGTTCCTGCTGGCGCCGACCACAGCCACCACCCGGGCTGTCCTGAGGACCTCGAACGGATCCCTTATAGAGCCCTTCACCGATAACCACCCACACAACATTTGGGGTGGCCCCGGGTTTAAGTCCTCCAATATAAACATctatcttaaaccacgggccagtgaggttgcagagcgtATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG1990 Uncharacterized conserved protein ... can be seen here     ..................................................................................................................