                                                                        Gene putatively regulated by attenuation in A_pernix

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:67 nt.     Distance to run of Ts=3 nt.   Size=24 nt.     Delta G=-10.50 kcal/mol
Antiterminator: Size=59 nt.     Delta G=-27.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCCGGGGGGACCCTAGGGGCGGGTGTGATAGCCGCCTTCTTCTTAAGCATGCTGCCTC
CCTAAGGAAGTACATAACTTTGTAGTGTGGGTGAATTCGCTGGAGTTTGTTAGACGTT
TGACGGGGGCTAGGGAGAAGCCTGATCCTCGGGAGCTTCTTGCCCTGCTGTCTCATAC
CCAGGATAGTCAGGGTGCTGAGCAGGGTCTGGAGCAATAGCTCGACCTCTAATTTTTC
CTCGAGGAGTAGAAGAGAGTTTACGGGTATTCATCAATAGCTTACATAGCTCGGCATT
GAAGGATAGGGTG

    APE2243 Gene: APE2243     GI: 14601938     BI number: APE2243     GOG: -------     Description: hypothetical protei TA A  G GT GC A  A CG CG CG AT TG |  C AT CG TA C  | T  | G  | T  | CG GC        AT TA       A  A CG        CG CG        GC CG        AT GT        GC T  C      G  | T  T      T  | CG        CG TG        TA TA        GC CG        GC GC        GT             CTAATTTTTCCTCGAGGAGTAGAAGAGAGTTTACGGGTATTCATCAATAGCTTACATAGCTCGGCATTGAAGGATAGGGTG     ..................................................................................................................