Gene putatively regulated by attenuation in A_tumefaciens_C58_Cereon_circular
Characteristics of the secondary structures
Terminator: Distance to gene:97 nt. Distance to run of Ts=3 nt. Size=21 nt. Delta G=-10.10 kcal/mol
Antiterminator: Size=43 nt. Delta G=-10.00 kcal/mol
Anti-antiterminator: Size=54 nt. Delta G=-18.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gctggaccagctccccgagcgtgtacgggaggtctcccctacgcttcgcggccttctcacccatgtcgatcggttcgcccctgatgagcttcgccttact
gtcgagttcccaaagttctgcttcgctttctgttgcgaagctgcggcggtgccgagcgcctttatgagttacggttccttcccaagaggaaccacgtttc
ttcgccatttagctctccttcaagttgacatgggaatgcatccggcataccgagaagcagccgcccgcatggtgaaattggtaaacacatcgcacttaaa
ATG
AGR_C_2200
Gene: AGR_C_2200 GI: 15888530 BI number: AGR_C_2200 GOG: ------- Description: AGR_C_2200
ct
t g
t t
t t
cg
gc
cg tt
ta t a
ta c t
cg c g
gc g a
t t cg
c | gt
t | at
tg | a
gc gc
a g cg
a g cg
a c gt c
c | t t c a
cg gc c a
cg gc tg
t t | t ta
tg c t cg
gc gc cg
a | gc ta
gc c | ta
cg gc gc
ta ta gc
acgtttcttcgccatttagctctccttcaagttgacatgggaatgcatccggcataccgagaagcagccgcccgcatggtgaaattggtaaacacatcgcacttaaaATG
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