Gene putatively regulated by attenuation in A_tumefaciens_C58_Cereon_circular
Characteristics of the secondary structures
Terminator: Distance to gene:46 nt. Distance to run of Ts=0 nt. Size=33 nt. Delta G= -8.30 kcal/mol
Antiterminator: Size=41 nt. Delta G= -5.80 kcal/mol
Anti-antiterminator: Size=27 nt. Delta G= -3.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttttggctgcccttcatcttgcgtgaccataaaagaaaaaagccccgcaaacgggcggggcaggttgatcgctcggggaaagttgggcaatgcccgggag
cgatggcttgatataagtgacaatagtgctgacgcgataggccatttccgtcccaaacagtacgcctatgcataaatttcgctcaatctgcagttttttg
aacgatgagttatgcaaatctgtaagacaacttgacagacttttgctttattctttgcattgcctcgaattgcacatattcgcctttaacataacgtgac
ATG
AGR_C_2767
Gene: AGR_C_2767 GI: 15888827 BI number: AGR_C_2767 GOG: ------- Description: AGR_C_2767
t
a g
g a
cg
at
at
| a ca
| t a a
| g gc
gc at
a ta at
c g ta | g
g t ta ta
t t t t gc
c t t | ta
t t t | cg
at gc ta
at at | c
cg cg | t
ta gt at
c a | a at
gc ta at
cg cg cg
ta ta gc
tttattctttgcattgcctcgaattgcacatattcgcctttaacataacgtgacATG
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