Gene putatively regulated by attenuation in A_tumefaciens_C58_Cereon_circular

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:133 nt.     Distance to run of Ts=3 nt.   Size=18 nt.     Delta G=-12.80 kcal/mol
Antiterminator: Size=29 nt.     Delta G= -7.70 kcal/mol
Anti-antiterminator:   Size=50 nt.     Delta G= -9.43 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCCGAAAACGTCATAAAGATGAACATCATCGCTGCTAAGAACTTCAATGACGGCCTGC
GGACGATCTTTCTGTCCATCGGTTATCTCGGCTGGTTCATCAGCCCCTATGTCTTCAT
CGCCAGCACCGTCATCATCATCGTGGCGCTGTTGCGCCGCCAGTTCTTTTCAGAGGCC
CGCCGCGCCATCATGGAAGAAAACCGGCCTTGAaatagccgcacttaaagggccaagcccacacgtcatttcaagc
atatccaagtgaatgccggcccctcgaaaagctgaaaaaaagcggaaaacATG

    AGR_C_2846


Gene: AGR_C_2846     GI: 15888866     BI number: AGR_C_2846     GOG: COG3503     Description: AGR_C_2846


 CT
C  A
C  T
 CG
 GT
|  C
A  T
C  T
T  C
A  A
C  T
T  C
 TG
 GC
 GC         C
 TA       T  A
 CG       A  T
 GC       C  C
G  |       TG
C  |       AT
T  |       CG        GT
C  |       TG       T  T
T  |       GC        CG
A  |       CG        GC
T  |      C  C       CG
 TA        AT        GC
 GC        CG        GC
 GC        GT        TG
 CG        AT        GC
                        CAGTTCTTTTCAGAGGCCCGCCGCGCCATCATGGAAGAAAACCGGCCTTGAaatagccgcacttaaagggccaagcccacacgtcatttcaagcatatccaagtgaatgccggcccctcgaaaagctgaaaaaaagcggaaaacATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[S] COG3503 Predicted membrane protein ... can be seen here

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