                                                                        Gene putatively regulated by attenuation in A_tumefaciens_C58_Cereon_circular

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:63 nt.     Distance to run of Ts=3 nt.   Size=33 nt.     Delta G=-13.00 kcal/mol
Antiterminator: Size=58 nt.     Delta G=-21.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCGGTTCGGCCATCCAATATTCGGCGACATCCGACAGCGTCTTGACCAGATCGGTTAC
CGGATCGGCGCTTGCCTGTGGAATTTCGCCGCGTTCGCGCGGCGCCAACCATTCGGAG
GCGGCCTTGCCGAGGTTTTCGAGCGCGCGGGCGACATTGATCGCGAAGGTTTCGGGGT
CGCGGATCAGGTAGGCCTCGGCGGTACTGGCGTCGAAGCCGGGCGTTTTGCCACCCTT
TTTCCCAGCCCCGCCGTCAACACCTGCCATGCACGATCCTCCACCAAATTTGTGTTTG
CACATTCTGCATG

    AGR_C_2953 Gene: AGR_C_2953     GI: 15888916     BI number: AGR_C_2953     GOG: -------     Description: AGR_C_2953   T T  C T  G G  G G  G A  G AT GC CG GC |  G CG TA AT GC        CG TA       T  A TG       G  A A  |       CG CG        GC AT        GC |  A       TG G  G       CG CG       |  G GC       |  C GC       |  G |  T      A  T GC       T  T CG        GT G  |       GT CG        CG GC        GC CG        GC             ACCCTTTTTCCCAGCCCCGCCGTCAACACCTGCCATGCACGATCCTCCACCAAATTTGTGTTTGCACATTCTGCATG     ..................................................................................................................