                                                                        Gene putatively regulated by attenuation in A_tumefaciens_C58_Cereon_linear

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:61 nt.     Distance to run of Ts=1 nt.   Size=18 nt.     Delta G= -9.00 kcal/mol
Antiterminator: Size=68 nt.     Delta G=-12.45 kcal/mol
Anti-antiterminator:   Size=54 nt.     Delta G= -9.21 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CGCGCAGATGGCGAGTGCAGGCTGTTGATGCGCACCGGCGAGGAAATGCCGGGATGGA
TCAACGTTCTCGGCCTTGGAAAATGATGTTGCTCTACGGGTGCCACGCCTGCTCCTCC
CTGCTGCCTGTACCTTGCTGTACGGTACTTAAAAATCAGCGGAAGGTGCTTTTGAATG
CCATCGCCAAACCGCCCGTCGGAAAACATTTCTTTCGCAGGCTGCCGCAGTGACGGCA
GATCTTTTGCAACATATTGTGGGGAGACCGGGATGACGAAACCGCTGGACAGAATTGA
CCGCAAGATATTG

    AGR_L_132 Gene: AGR_L_132     GI: 15890173     BI number: AGR_L_132     GOG: COG1522     Description: AGR_L_132             C   T       C  G A  G      C  T A  C       GC GC        CG TA        CG T  T      A  A T  |      A  A T  |      A  A C  |      C  A GC       C  C TG       G  A GC       C  T GC       T  T |  A      A  T A  A      C  C A  A      C  T GC       G  | GC       T  | CG        AT GC        AT A  |       GC C  |       TG T  |      T  C A  |       TA A  |       TG A  |       CG A  |       GC A  |      T  T       GT T  |      G  G      A  G T  |      G  |      C  A C  |      A  |       GC A  |      A  |       CG T  |       GC        CG GC        GC        GC GC        CG        TA CG        GC        CG                         ATCTTTTGCAACATATTGTGGGGAGACCGGGATGACGAAACCGCTGGACAGAATTGACCGCAAGATATTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG1522 Transcriptional regulators ... can be seen here     ..................................................................................................................