                                                                        Gene putatively regulated by attenuation in A_tumefaciens_C58_Cereon_linear

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:25 nt.     Distance to run of Ts=0 nt.   Size=17 nt.     Delta G= -6.40 kcal/mol
Antiterminator: Size=37 nt.     Delta G= -3.40 kcal/mol
Anti-antiterminator:   Size=50 nt.     Delta G= -5.44 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AGCGTCTTGACGTCGGCTTCATAGCCCAGCGCATCGAGCAGGACGGAGGCGACGCCAT
TGGTCGCGGTAATGTCTGTCCAGCCGGGATCGCTGAGACGAATCGTCCTGCAGGCCGC
GTCGTCGGCCGCCTGAAGCGGGGTGGAGAAGGCTGCCACGGACAGAATGAGACCGGCG
GCGATGCGATGCAGATGAGAAACGGATTTCATTGCGGCTCCCCTTTTATTAGTCCAGT
TTATTGAACACCACATTGTTTTTGCCTGTGAAGCGGGTATTTTTCGATGGTTGATATA
AGGAATTTTAATG

    AGR_L_471 Gene: AGR_L_471     GI: 15890344     BI number: AGR_L_471     GOG: COG0583     Description: AGR_L_471 TC C  C GC GC C  T G  T T  T       AC T  T      C  A A  A      C  T C  T       AT T  T       CG TA        AT TG        AT AT        GT GC       T  T GC       T  T C  A      A  G A  G      T  C        A A  |      T  |      G  A A  |      T  |      T  G GT        GC        GC AT        AT        TG GT        CG        CG TA       |  T       CG AT        CG        GT GT        TA        TA                         TTTTTCGATGGTTGATATAAGGAATTTTAATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG0583 Transcriptional regulator ... can be seen here     ..................................................................................................................