Gene putatively regulated by attenuation in A_tumefaciens_C58_Cereon_linear
Characteristics of the secondary structures
Terminator: Distance to gene:44 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-24.50 kcal/mol
Antiterminator: Size=50 nt. Delta G= -6.55 kcal/mol
Anti-antiterminator: Size=25 nt. Delta G= -8.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gaaatggcgtacaaaatcatgtgcgccccttacaggagataaattgctccgcaatttatctccggcaaagatccgtcgtcgctaaagcaacgacgtaacc
gcgacattcggccttgccgaatgcgctggacgcggggtggagcagcccggtagctcgtcaggctcataacctgaaggccgcaggttcaaatcctgccccc
gcaaccaaagtttacacccaatatcaaagggctccgaggaaactcggagccctttttgcgttcagaacgccttggaatataaaacgccaagctgaagacg
TTG
AGR_L_1339
Gene: AGR_L_1339 GI: 15890794 BI number: AGR_L_1339 GOG: ------- Description: AGR_L_1339
ta
t c
ta
gc
a c
a c
a a
c a
c t
a a
a t
c c
g a
c a
a c a
c a cg aa
t a cg g a
t t cg gc
gc gc at
gc | t gc
at | c cg
cg | c cg
gc | g ta
c c ta cg
c c cg gc
gc cg gc
gc ta gc
tttttgcgttcagaacgccttggaatataaaacgccaagctgaagacgTTG
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