                                                                        Gene putatively regulated by attenuation in A_tumefaciens_C58_Cereon_linear

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:129 nt.     Distance to run of Ts=3 nt.   Size=36 nt.     Delta G=-17.80 kcal/mol
Antiterminator: Size=49 nt.     Delta G=-18.00 kcal/mol
Anti-antiterminator:   Size=15 nt.     Delta G= -6.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAACAGGGCAGGCGTTTCACCGATGTGCAGACCGTAACACAGCTGGCGACCTCGCTCT
CCCTGTCACGTAGCCATGTCGGCCGCAAACTTGCGGCAGCCGAACTGATCGGCGGCAT
CGGTTGGAGCGGACGGCGCGGCCGTTCCGCGCTGTGGATTTCGCAGGGTTTTTACGAG
GAATATGCCCGCACGCAGGCCCGCAAGCTGCTCATTCTCGATGAAGCCCTGATCGGTT
TTGTATGAagctgcagaggcgatcagcctcaaaacaaggttttcatcgatggttatgaagtatatccaTTG

    AGR_L_1717 Gene: AGR_L_1717     GI: 15890975     BI number: AGR_L_1717     GOG: -------     Description: AGR_L_1717             A           C  T           G  C           G  G            CG            GT            GT         G            CG       C  T            TG       C  T           |  A       GC           A  G       GC            GC        CG            TG        GC            CG        CG           A  A       GC           A  |       GT            GC        CG            CG        AT            CG       |  G   T        GC       |  G C  G      |  G      |  A A  A      |  C      |  T AT       A  G      |  T GC        CG        GT CG        GC        GC CG        GC        CG GC        CG        GC                         AGGGTTTTTACGAGGAATATGCCCGCACGCAGGCCCGCAAGCTGCTCATTCTCGATGAAGCCCTGATCGGTTTTGTATGAagctgcagaggcgatcagcctcaaaacaaggttttcatcgatggttatgaagtatatccaTTG     ..................................................................................................................