Gene putatively regulated by attenuation in A_tumefaciens_C58_Cereon_linear

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:192 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-19.80 kcal/mol

                                                                        Nomenclature/Definitions

TTGGCTGGAAGGCGACGCGCCGCAGGCTTGCCACGTGAggcacgtcgaaatctaaccggcttccggagaaga
cgccctgtgcccgagtaatttcgggcacagcgtgttttgcgcgccaaatgcagccggatctccgttcacccgtcacaaaaagaagaaatcccgcctctag
aatctcctttcgaatcctcctgaaaggatcgcagaaggcattgggcacgacggcaattttcagcccttgcaaataaacattatacattatatgataatat
atactaatttagcaaacaggagaaggcgATG

    AGR_L_2726 --- AGR_L_2725 --- AGR_L_2724 --- AGR_L_2723


Gene: AGR_L_2726     GI: 15891472     BI number: AGR_L_2726     GOG: COG0491,COG3453     Description: AGR_L_2726p
Gene: AGR_L_2725     GI: 15891471     BI number: AGR_L_2725     GOG: COG0640     Description: AGR_L_2725p
Gene: AGR_L_2724     GI: 15891470     BI number: AGR_L_2724     GOG: COG2391     Description: AGR_L_2724p
Gene: AGR_L_2723     GI: 15891469     BI number: AGR_L_2723     GOG: COG2391     Description: AGR_L_2723


          aa
         t  t
          gt
          at
          gc
          cg
          cg
          cg
          gc
          ta
          gc
          ta
         c  |
         c  |
          cg
          gc
          cg
            tgttttgcgcgccaaatgcagccggatctccgttcacccgtcacaaaaagaagaaatcccgcctctagaatctcctttcgaatcctcctgaaaggatcgcagaaggcattgggcacgacggcaattttcagcccttgcaaataaacattatacattatatgataatatatactaatttagcaaacaggagaaggcgATG


                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[R] COG0491 Zn-dependent hydrolases, including glyoxylases ... can be seen here
[S] COG3453 Uncharacterized protein conserved in bacteria ... can be seen here
[K] COG0640 Predicted transcriptional regulators ... can be seen here
[R] COG2391 Predicted transporter component ... can be seen here
[R] COG2391 Predicted transporter component ... can be seen here

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