Gene putatively regulated by attenuation in A_tumefaciens_C58_Cereon_pl-AT
Characteristics of the secondary structures
Terminator: Distance to gene:156 nt. Distance to run of Ts=3 nt. Size=28 nt. Delta G= -8.30 kcal/mol
Antiterminator: Size=32 nt. Delta G=-13.20 kcal/mol
Anti-antiterminator: Size=48 nt. Delta G=-17.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
cccgtcggacactctgccaaaaggttgactcttgtgccattgccccttgacctcaactctagttgaggttgtacgaattttaaggcggtcgcggcccatc
gaacgcgaccacgtcaaaggagggcgtcttggtcacatattttcgctactcaaaacccaaatattccgtcagaacacgcctggttggagccgtattgttg
cagttacttggcaccggattgttagcgttcatcttttgccatctggacacgcttacggcgaagccaacgataactctcggtcagtttttgccatgcttgg
TTG
AGR_pAT_211
Gene: AGR_pAT_211 GI: 16119379 BI number: AGR_pAT_211 GOG: ------- Description: AGR_pAT_211
ct
t a
cg
at
at
cg
ta
cg
cg
at
gt
| g
| t
| a at
| c c c g
| g c g a g
| a c a a a
| a g a a g
| t gc cg
| t cg tg
| t gc gc
| t cg cg
ta ta at
ta gc | c
cg gc | t
cg | a | t
| c | c cg
cg cg cg
cg gt at
gt gc gc
acatattttcgctactcaaaacccaaatattccgtcagaacacgcctggttggagccgtattgttgcagttacttggcaccggattgttagcgttcatcttttgccatctggacacgcttacggcgaagccaacgataactctcggtcagtttttgccatgcttggTTG
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