Gene putatively regulated by attenuation in A_tumefaciens_C58_Cereon_pl-AT
Characteristics of the secondary structures
Terminator: Distance to gene:201 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G=-23.20 kcal/mol
Antiterminator: Size=49 nt. Delta G=-11.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttacccctgggggcgaagatccggaattgacggcattcgatccagacaaacctgaaaaccagcaagggatcgggaatttgcgttcccgatcccttttttt
agTCAAACGGTTGCTGTCGTCTGATCGACGGTTTCAGCGCCCGGCGAGTTTTTCTTGA
TGGATTCGATGGCGTTCAAGACAGAAGCCTTGGCCTTGTATCCTTCTGAGCTGAACAT
GATTTCGCCGTTCGATGCCCGGAAGCGGAACCGGAATTCGCCAGCCTTGTCCTTGAAA
ACCTCAAATTTGTACATGGTATTTCCTTG
AGR_pAT_519
Gene: AGR_pAT_519 GI: 16119587 BI number: AGR_pAT_519 GOG: ------- Description: AGR_pAT_519
a
a a
a c
gc
ta
cg
c c
a a
a a
a g
c |
a |
g |
a | tg
cg t c
cg tg
ta at
at at
gc gc
cg gc
tg gc
tg cg
| a ta
| a at
| t gc
| t gc
at gc
cg at
gc at
tttttagTCAAACGGTTGCTGTCGTCTGATCGACGGTTTCAGCGCCCGGCGAGTTTTTCTTGATGGATTCGATGGCGTTCAAGACAGAAGCCTTGGCCTTGTATCCTTCTGAGCTGAACATGATTTCGCCGTTCGATGCCCGGAAGCGGAACCGGAATTCGCCAGCCTTGTCCTTGAAAACCTCAAATTTGTACATGGTATTTCCTTG
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