Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_circular

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:143 nt.     Distance to run of Ts=1 nt.   Size=32 nt.     Delta G=-15.20 kcal/mol
Antiterminator: Size=35 nt.     Delta G=-12.90 kcal/mol
Anti-antiterminator:   Size=37 nt.     Delta G= -9.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTCAGTGACGGTAAGGGAAAGCAAACGCTCATAGAAATGGCCTGCCACTGGCACGCCG
TCGATACTAACTTCCACGCGCGGTTTCATAGTCAGTCCCAAAGGCTGGTTAACGGCTT
GGCCGTGCTGGTGGAAGGAATGTCCGGCATGGTAATTTTTGTGCCGAGCGGAAGGACA
GGCCCGAGCGCGGCAAGGCCGGGATTAGCATCAATCACAGCTTCGACCACCTTGGCCG
TGCGCCCATAAAAAGCGAGGCAGGCGAGGTCAACCGTCTCGCCCTGCCGTGTTGTGTA
GATTGTCGCCATG

    Atu0459


Gene: Atu0459     GI: 17934372     BI number: Atu0459     GOG: -------     Description: hypothetical protei


  A
C  A
C  A
 CG        GG
 TG       C  C
 GC        AT        GG
 AT        AT       A  A
 CG        TG       A  A
T  G       TG       G  T
G  T       GC       G  G
 AT        GC       T  T
 TA        TG        GC
A  |      |  T       GC
C  |       CG        TG
T  |       GC        CG
T  |       GT        GC
 TA       A  G       TA
 GC       A  G       GT
G  G       AT        CG
 CG        CG        CG
 GC        CG        GT
                        AATTTTTGTGCCGAGCGGAAGGACAGGCCCGAGCGCGGCAAGGCCGGGATTAGCATCAATCACAGCTTCGACCACCTTGGCCGTGCGCCCATAAAAAGCGAGGCAGGCGAGGTCAACCGTCTCGCCCTGCCGTGTTGTGTAGATTGTCGCCATG
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