Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_circular
Characteristics of the secondary structures
Terminator: Distance to gene:111 nt. Distance to run of Ts=0 nt. Size=20 nt. Delta G=-18.40 kcal/mol
Antiterminator: Size=70 nt. Delta G=-23.21 kcal/mol
Anti-antiterminator: Size=54 nt. Delta G=-19.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AATTTCGTCGCTCTGGCCGAGAAGCTCAGCGAAGCCTATGGCCCGCGCTTCCAGCCGA
CGCCGCTCCTGAAGGACATGGCGGCCAAGGGCGAGACCTTCTACGGTCGCTTCGACCC
CTATGCCAGCGCCGCGAAGGCGGCATAAggcaccaagccagatcatcgaacaggcccttcggggcctgttttattatgt
ggatgccatcgcttttcgtgcatcctttgccgggctgaggcgttgaaaagcgtgaccgggcaaaacgcccgctgccacacaatcagtacgcctcaggaga
cagcgATG
Atu0504
Gene: Atu0504 GI: 17934417 BI number: Atu0504 GOG: ------- Description: hypothetical protei
AA
G G
CG
GC
CG
CG
GC
| A
CT C T
T A G A
T C A A
CG Cg
CG Cg
AT Gc
GC Ta
| G | c
| C | c
| T | a
AT | a
GC | g
CG | c
| A | c
GC A a
GC T g
GC C a
| C C t
A T C c
A A C a
C T At
CG Gc tc
GC Cg t g
GC Ta cg
| A Ta cg
| G C c cg
| C G a gc
CG Cg gc
GC Tg at
GC Gc cg
TG Gc at
tttattatgtggatgccatcgcttttcgtgcatcctttgccgggctgaggcgttgaaaagcgtgaccgggcaaaacgcccgctgccacacaatcagtacgcctcaggagacagcgATG
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