Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_circular
Characteristics of the secondary structures
Terminator: Distance from promoter:79 nt. Distance to gene:71 nt. Distance to run of Ts=0 nt. Size=22 nt. Delta G=-17.00 kcal/mol
Antiterminator: Distance from promoter:44 nt. Size=44 nt. Delta G=-12.70 kcal/mol
Anti-antiterminator: Distance from promoter:41 nt. Size=14 nt. Delta G= -6.00 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgaat-tacaat. It has a score value of 74.97 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgaattgctgtctcgcagcggtacaatcctcacttgaattaaacgaacttggcgggggacgccaggcgccggacctctccggggggatgatggaacggc
cttaagacgggtggtcagctgaccgcccgtttttcgtttctgtcattcaactgttatcaaaaaacggtttggtgcatttctgatatcaattcggattctc
ttaaATG
Atu0668
Gene: Atu0668 GI: 17934578 BI number: Atu0668 GOG: ------- Description: conserved hypothetical protei
gg
t a
a a
gc
tg
a g
gc
gc
gt
gt
| a
| a
| g
g a gc
gc a t
cg cg
cg ta
ct tg gc
c c c t gc
at t | tg
gc cg gc
gc cg gc
cg at gc
cg gc cg
tttttcgtttctgtcattcaactgttatcaaaaaacggtttggtgcatttctgatatcaattcggattctcttaaATG
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