Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_circular
Characteristics of the secondary structures
Terminator: Distance to gene:106 nt. Distance to run of Ts=0 nt. Size=38 nt. Delta G=-13.10 kcal/mol
Antiterminator: Size=39 nt. Delta G=-15.50 kcal/mol
Anti-antiterminator: Size=45 nt. Delta G=-17.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AGGATATCAGGCTGGCCGGCGGCCAGGGCGCGGGCGTCGCTGAGCTTCTTCAGCATCA
GTTCGCGCTGTGCGAAGACATCATTATAGGTGCTGTCGCTGCGGAACAGCAGGAAACC
GCGCTGGTTGACGGCCTGTTCCAGCATGGCCGCCGTCGCACCATCCACAGCCTGGATG
ATGTCCTTGGTGCGGTTGTTTTCAATCGTGACACGCTCGCTCCCCCGGGTCTGCCAGA
ACACAACCGCAGACGCGAGCAGACACACGCCCATCAAGGCACAGAAGGTGGCTATGAG
CTTCAGGTTAATG
Atu0737
Gene: Atu0737 GI: 17934647 BI number: Atu0737 GOG: ------- Description: hypothetical protei
G G
C C A C
G T C C C
CG G A AT
CG A T CG
AT CG CG
AT CG TA
A G T C | T
G A T C | G
G C G | | A
A G T | | T
CG C | | G
GC CG | T
| C GC | C
AT GC | C
CG CG | T
AT AT AT
AT GC CG
GC TG CG
GC | C AT
| A TA CG
CG GC GC
GC GC CG
TA TA TG
TTGTTTTCAATCGTGACACGCTCGCTCCCCCGGGTCTGCCAGAACACAACCGCAGACGCGAGCAGACACACGCCCATCAAGGCACAGAAGGTGGCTATGAGCTTCAGGTTAATG
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