                                                                        Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_circular

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:142 nt.     Distance to run of Ts=3 nt.   Size=28 nt.     Delta G=-13.40 kcal/mol
Antiterminator: Size=16 nt.     Delta G= -6.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CGCGGGCGGGCATGGAAAGCTGCTCCGCCAGTTTCGCGAGCATCTCGCGGCTGGGGGA
TGAACGCCCGCTTTCCACGAAGCTCAGATGGCGCGCCGATATGTCCGCCTCTATCGCC
AGATCGAGCTGGCTCAGCCTGCGGCGGGCTCGCCATTCTTTCAGCACCTGGCCGACAT
GTTCGCGATGATGTGTCATgtcccgcagcctagcagaagacatcgccaatgcgattacctctgaggtaattgttccgcttcccgac
cgccggcatgtttgggccgtcaaccagaaggagcgcaaccATG

    Atu0744 Gene: Atu0744     GI: 17934654     BI number: Atu0744     GOG: NOG09787     Description: conserved hypothetical protei            CC           G  T           A  G           C  C            TG            CG CG        GC T  A      G  G A  G       TG GC        CG AT        GC CG        AT CG        GC GC        CG             CCATTCTTTCAGCACCTGGCCGACATGTTCGCGATGATGTGTCATgtcccgcagcctagcagaagacatcgccaatgcgattacctctgaggtaattgttccgcttcccgaccgccggcatgtttgggccgtcaaccagaaggagcgcaaccATG     ..................................................................................................................